Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03280 1348 / 0 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) AT1G15960 141 / 6e-35 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 135 / 4e-33 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT1G47240 133 / 3e-32 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT2G23150 125 / 9e-30 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT5G67330 125 / 9e-30 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT4G18790 124 / 3e-29 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127100 [exp] 2169 / 0 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.005G181100 [exp] 152 / 3e-38 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181000 [exp] 149 / 3e-37 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080400 [exp] 148 / 5e-37 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 144 / 8e-36 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 142 / 3e-35 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.007G050600 [exp] 121 / 2e-28 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050700 [exp] 121 / 2e-28 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.002G121000 [exp] 119 / 1e-27 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026516 [exp] 1449 / 0 AT5G03280 628 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10013804 [exp] 1399 / 0 AT5G03280 1076 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 1398 / 0 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10013803 [exp] 805 / 0 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10018132 [exp] 147 / 8e-37 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10028542 [exp] 144 / 7e-36 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 141 / 9e-35 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10024069 [exp] 141 / 9e-35 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10010395 [exp] 130 / 2e-31 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 127 / 2e-30 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G090800.4 pacid=42809602 polypeptide=Potri.016G090800.4.p locus=Potri.016G090800 ID=Potri.016G090800.4.v4.1 annot-version=v4.1 ATGGACACTGAATTTGCAAATGCTAACCATCCACTGCATTTTCTTCATCGGCTGCTTCCTGCTGTTGGACCTGGACTTCTGATTGCAATTGGATATGTTG ATCCTGGAAAGTGGGCAGCAACTGTTGAAGGAGGTGCTCGTTTTGGGTTTGATCTGGTACTACCGATGCTCCTTTTCAATTTTGTTGCCATTTTATGCCA GTATCTCTCTGCTCGAATTGGTGTGATCACTAGAAAAGATCTTGCCCAGATTTGCAATGATGAGTATGACAAGTGGACATGCATGTTTCTAGGAGTTCAA GCAGCACTTTCCGTGATTGCATTGGACCTCACAATGATTCTCGGCATTGCACATGGTCTTAATCTTCTCTTCGGGATGGACTTATCCACTTGTGTTTCTT TAGCTGCTGCTGAGGCCATTTTATTTCCATTTTTTGCTACCCTCATGGAGAGATGCAAGGCAAGTTTCCTTTGCACATGCATTGCAGGCTTCATATTACT ATTGTATTTCTTCGGGGTTCTCATCAGCCAACCAGGAATCCCTCTTTCCATAAACGGGACGCGAACAAAATTAAGCGAGGAGAGTGTGTTTGCCCTGATG AGTCTACTTGGAGCAAGTATCATGCCTCACAATTTTTTCCTCCATTCTGCTATTGTGCTGCAACATCAGGGACCACCAAATATTTCCAGGGATGCCTTGT GTCTTAACCATTTTTTTGCCATTTTATGCATCTTCAGTGGCATCTATCTGGTAAATTTTGTGCTTATGAACTCCGCTGCAAATGTGTTCCACAGCACTGG CCTTGTTTTACTTACTTTTCCTGATGCGATGTCACTAATGGAACAGGTGTTCAGGAGTCCAGTAGCACCCTTTGGCTTTTCACTCATCTTGTTTTTTGCG AATCAAATCACAGCATTTTCCTGGAATCTTGGTGGGCAAGTAGTTTTACACAATTTTCTCAGATTGGATATTCCTAATTGGCTTCAACGTGCGACATTCA GAATTATTGCAGTTGTTCCAGCCCTTTATTGTGTGTGGACTTCAGGAGTTGAAGGAATATACCAGTTGCTTATACTTACACAGGTTATGGTTGCTTTACT TCTTCCATCTTCCGTGATCCCTCTTTTCCATATTGCTTCATCAAGACAAGTGATGGGTGTCTACAAAATTTCTCCATTCTTGGAGTTCGTAGCGCTCATT TCATTCATGGGGATGCTTGGCATAAAGATTATTTTTGTGGTGGAAATGGTATTTGGGGATAGTGATTGGGTAGGTACTTTGAGATGGAGTACAGTAAGTG GTTCGTCTACCTCTTACATTGTTCTTCTCATTACTGCCTGTTCATCATTTTGTTTGATGCTCTGGCTAGCAGCTACCCCATTGAAATCTGCTACTCGCTT AGATGCTCAGGTATGCAACTGGGATGTACAAAATGCTGTATCCGAACCATCCACGCTGATAGAGGAAGAATTTTTGACTGAAAATATATGTACTGGAGAG GAGCTTATCGAGAGGCAGGAACAATTACCAGAACCAGGGAAATCTTTTGAGAGTTACTCAAATATAACTGTTGCAAATGCTGATCCTGATTTGCCTGAGA CAATTATGGAGTCTGATCAGGAACTTCATTTGACTACTATCAAAGAAAAACATTCTGAAGTCGCATTTTCTAGTCCCCAAACATTCTATGAGGAAACATC ACCTACAACAGAGTCAGCATCTCTGTCAGCTTCTGTCAACTTGGTTCCTGATGCTGAATTGCTTGTTGCCAAGAAGGCTAAGATTGAATCAATGGACCCA GTTGAAAAGACTCTGGATATAGAGGGTGAGTTGCATACTGAAAAGGAGGATGATGAAGGGGATAACTGGGAGCCTGAAGATTCATCCAAAGGGGTTCCTG GAAGCACTTTGTCTTTGACATCTGATGGTCCTGGATCATTTAGGAGTCTTAGTGGTAAAAGTGATGCAGGTGGGAATGGTGCTGGAAGTCTTTCAAGATT AGCAGGGTTGGGGCGCGCTGCAAGACGTCAATTAGCTGCAGTTCTTGATGAGTTTTGGGGACAATTGTATGACTTCCATGGGCAAATAACTCAAGAAGCA AAGACCAAGAAACTGGATGCCTTGGGGGTTGATTTGAAACTTGCTTCTTCCCAGCTGAAAGTGGACACTGCTGGGAAGGAATCAAGCGGATATTTCTCAT TGGTAGGTGGCAGAGCATCTGATTCATTGATCAATTCAAGTTTATGCGACTCCCCCAAGCAATTGCGGGTGCAAAGCAATATTGACTCATCTTATGGAGT TCAGAGGGGACCATCCTCATTGTGGTCCAACCACATGCAGTTGCTGGATGCATATGTACAAGGTCCCAGCCAGAGTATTGCTGACTCAAGTGAGAGACGG TATTCTGGTGTACGCACGCCACCATCTTCTGATGGCTGGGATAATCAGCCAGCTACAGTTCATGGTTATCAGATTGCATCTATTGCCAATCGAATTGCCA AGGACAGGGGTTTCAGTAGCTTAAATGGCCAAATGGAGTCACCAGCACCAATATCCCCATCCTTAGGACCTAGAAATTATAGGGACCCGCTCACTGTCTC TATGGGGAAAAATTTGCAAAATGGACTAAGCTCTTCACAAGCGTCAGGATTTCAGAATCTTGCAGTAACTAGAAATAGCCCATTACAGTCTGAAAGACCT TATCATGATGTATACTCTGGATCTGCTGATGATACAGGAATGTCAGCTAATACAAAGAAGTACCATAGCTTGCCTGACATTTCAGGGCTTGCTGGTCCCT ATAGGGACCTGTATATGTCTGAAAAGAATGCTCAGTGGGACAAGTCTGCAGGATTTGGTTCCTCTGTTGGTAGATCAGCTTATGAACAATCTTATTATTC AAATACCGGATCAGGAGCAGGAGGTCCTTTGTCTTTTAATGGACTATCAAAAGGGCATGGGGATGCTTTCTCGCTTCACATGACTCCAGACCCTGGATCC CTCTGGTCCAAGCAACCATTTGAACAGTTTGGTGTTGCTGACAAAATTCGTGCTGTTGGGAGTGGATTAGGAAATCGGTCTAATTCAATTAATCGCGAAG TAACTTCTCCTGTGGATTCAGAGGCCCAACTTCTTCGGTCTTTCAGGCATTGTATTGTGAAGCTTTTGAAATTGGAAGGATCTGACTGGCTGTTTAGGCA AAACGATGGAGCTGATGAGGATCTAATTGATTGTGTGGCTGCAAGGGAGAGGTATTTGTATGAAGCTGAAACAAGAGAAATGAACCATGTAGATCACATG GGTGGATCTACATATTTATATTCTGATAGGAAATCTGGTTCTGCTTTGAGGAATGATGATGCCAGTATTACCAACATTATGGTTTCCTCAGTTCCTCATT GCGGGGAGGGCTGTGTTTGGAGATCGGATTTGATAATAAGCTTTGGGGTCTGGTGTATTCACCGGATTCTTGATTTGTCACTAATGGAAAGCCGTCCAGA GTTGTGGGGGAAATACACTTATGTGTTGAATCGTCTTCAGGGCATCATAGAATTGGCATTTTCAAAGCCCCGTACTCCCATGTCCCCATGCTTCTGCCTT CAAATCCCTGCATCTCACCAGCATAGATCAAGTCCACCTGCTTCGAATGGAATGTTGCCCCCTGCTTCAAAACCAGGTAGGGGGAAATGCACAACTGCAG CGACGCTTCTGGACTTGATTAAGGATGTGGAGATTGCCATATCTTGCCGAAAGGGTCGATCGGGAACTGCTGCTGGTGATGTTGCTTTTCCGAAGGGAAA AGAGAATCTGGCTTCTGTGCTTAAGCGCTACAAGCGCCGGTTATCCAACAAACTAATCGGTAGTAAATGA
AA sequence Show only first row Show all	>Potri.016G090800.4 pacid=42809602 polypeptide=Potri.016G090800.4.p locus=Potri.016G090800 ID=Potri.016G090800.4.v4.1 annot-version=v4.1 MDTEFANANHPLHFLHRLLPAVGPGLLIAIGYVDPGKWAATVEGGARFGFDLVLPMLLFNFVAILCQYLSARIGVITRKDLAQICNDEYDKWTCMFLGVQ AALSVIALDLTMILGIAHGLNLLFGMDLSTCVSLAAAEAILFPFFATLMERCKASFLCTCIAGFILLLYFFGVLISQPGIPLSINGTRTKLSEESVFALM SLLGASIMPHNFFLHSAIVLQHQGPPNISRDALCLNHFFAILCIFSGIYLVNFVLMNSAANVFHSTGLVLLTFPDAMSLMEQVFRSPVAPFGFSLILFFA NQITAFSWNLGGQVVLHNFLRLDIPNWLQRATFRIIAVVPALYCVWTSGVEGIYQLLILTQVMVALLLPSSVIPLFHIASSRQVMGVYKISPFLEFVALI SFMGMLGIKIIFVVEMVFGDSDWVGTLRWSTVSGSSTSYIVLLITACSSFCLMLWLAATPLKSATRLDAQVCNWDVQNAVSEPSTLIEEEFLTENICTGE ELIERQEQLPEPGKSFESYSNITVANADPDLPETIMESDQELHLTTIKEKHSEVAFSSPQTFYEETSPTTESASLSASVNLVPDAELLVAKKAKIESMDP VEKTLDIEGELHTEKEDDEGDNWEPEDSSKGVPGSTLSLTSDGPGSFRSLSGKSDAGGNGAGSLSRLAGLGRAARRQLAAVLDEFWGQLYDFHGQITQEA KTKKLDALGVDLKLASSQLKVDTAGKESSGYFSLVGGRASDSLINSSLCDSPKQLRVQSNIDSSYGVQRGPSSLWSNHMQLLDAYVQGPSQSIADSSERR YSGVRTPPSSDGWDNQPATVHGYQIASIANRIAKDRGFSSLNGQMESPAPISPSLGPRNYRDPLTVSMGKNLQNGLSSSQASGFQNLAVTRNSPLQSERP YHDVYSGSADDTGMSANTKKYHSLPDISGLAGPYRDLYMSEKNAQWDKSAGFGSSVGRSAYEQSYYSNTGSGAGGPLSFNGLSKGHGDAFSLHMTPDPGS LWSKQPFEQFGVADKIRAVGSGLGNRSNSINREVTSPVDSEAQLLRSFRHCIVKLLKLEGSDWLFRQNDGADEDLIDCVAARERYLYEAETREMNHVDHM GGSTYLYSDRKSGSALRNDDASITNIMVSSVPHCGEGCVWRSDLIISFGVWCIHRILDLSLMESRPELWGKYTYVLNRLQGIIELAFSKPRTPMSPCFCL QIPASHQHRSSPPASNGMLPPASKPGRGKCTTAATLLDLIKDVEIAISCRKGRSGTAAGDVAFPKGKENLASVLKRYKRRLSNKLIGSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.016G090800 [exp]	0	1
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	3.46	0.8134
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	3.60	0.8359
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	5.47	0.8248
AT4G19112		CPuORF25	conserved peptide upstream ope...		Potri.003G101650 [exp]	7.54	0.7200
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Potri.017G101100 [exp]	8.36	0.7898
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.010G122200 [exp]	9.16	0.8060
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	10.00	0.8129
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	12.12	0.7666
AT5G47020			unknown protein		Potri.003G086200 [exp]	15.29	0.7735
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	15.49	0.7782

Compare expression of checked genes

Potri.016G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.