Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAL1.3,PAL4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37040 1267 / 0 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 1245 / 0 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 1179 / 0 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 1045 / 0 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126800 [exp] 1412 / 0 AT2G37040 1269 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224100 [exp] 1262 / 0 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.008G038200 [exp] 1258 / 0 AT2G37040 1213 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224200 [exp] 1244 / 0 AT2G37040 1228 / 0.0 PHE ammonia lyase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026518 [exp] 1303 / 0 AT2G37040 1256 / 0.0 PHE ammonia lyase 1 (.1) Lus10013805 [exp] 1289 / 0 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10040416 [exp] 1217 / 0 AT2G37040 1194 / 0.0 PHE ammonia lyase 1 (.1) Lus10023531 [exp] 1217 / 0 AT2G37040 1198 / 0.0 PHE ammonia lyase 1 (.1) Lus10009220 [exp] 134 / 1e-32 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10001405 [exp] 112 / 1e-29 AT3G10340 122 / 3e-34 phenylalanine ammonia-lyase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00221 [poplar] [flax] Lyase_aromatic Aromatic amino acid lyase
Representative CDS sequence Show only first row Show all	>Potri.016G091100.1 pacid=42809643 polypeptide=Potri.016G091100.1.p locus=Potri.016G091100 ID=Potri.016G091100.1.v4.1 annot-version=v4.1 ATGGAGACGGTCACCAAGAATGGCTACCAAAATGGTTCTTTGGAGAGTTTGTGCGTCAACCAACTTGATCCACTCAGCTGGGGAGTTGCTGCCGAGGCAA TGAAAGGAAGCCACTTAGATGAAGTCAAACGTATGGTGGCTGATTATAGGAAGCCTGTTGTCAAGCTTGGAGGTGAGACCTTGACCATTGCTCAGGTTGC ATCCATTGCTGGTCATGATACTGGTGATGTCAAGGTGGAGCTTTCTGAGTCTGCAAGGCCTGGTGTCAAGGCTAGCAGTGACTGGGTCATGGATAGCATG GACAAGGGAACTGATAGTTATGGCGTTACTACTGGTTTTGGTGCCACTTCTCACAGAAGAACCAAACAAGGCGGTGCTCTTCAGAAGGAACTTATTAGAT TCTTGAATGCTGGGATCTTTGGCAATGGAACGGAAACATGCCACACACTGCCTCACTCAGCAACTAGAGCAGCAATGCTTGTCAGAATCAACACTCTCCT CCAAGGTTACTCTGGCATCAGATTTGAAATCTTGGAAGCTATTACCAGGCTCCTCAATAACAACATCACTCCATGCTTGCCACTACGAGGCACAATCACT GCTTCAGGTGATTTAGTTCCGCTATCCTACATTGCTGGATTACTGACTGGCAGGCCCAATTCCAAGGCCACTGGTCCCACCGGAGAAGTGCTAGATGCTG CTGAAGCCTTTAAAGCAGCTGGCATTGAATCTGGATTCTTTGAGTTGCAGCCTAAAGAAGGCCTTGCTCTAGTTAATGGAACTGCAGTTGGTTCTGGCTT GGCTTCTATGGTTCTTTTCGAGACGAACGTTCTTGCTGTCTTATCGGAACTCTTGTCAGCAATTTTTGCTGAGGTTATGAATGGTAAACCTGAATTCACT GACCATTTGACACACAAATTGAAGCACCATCCAGGTCAAATTGAGGCTGCAGCTATAATGGAGCACATTTTAGATGGCAGCGCTTACATGAAGGCAGCTA AGAAGTTGCATGAAACGGACCCCTTGCAGAAACCAAAGCAGGATCGCTATGCTCTAAGGACTTCACCCCAATGGCTTGGTCCCCAGATTGAAGTAATCCG ATTCTCGACCAAGTCAATTGAAAGAGAGATTAATTCAGTGAACGACAACCCTCTAATTGATGTTTCAAGGAACAAGGCTATACATGGTGGTAACTTCCAG GGAACTCCAATTGGAGTCTCAATGGATAATGTACGTTTGGCTATTGCATCAATAGGCAAGCTGCTATTTGCTCAGTTCAGTGAGCTCGTAAATGATTTCT ACAACAATGGATTGCCATCGAATCTCACTGCTAGCAGGAATCCAAGTTTGGATTATGGCTTCAAGGGAGCTGAAATAGCAATGGCCTCCTACTGTTCTGA GCTTCAGTATCTCGCCAATCCAGTCACCACCCATGTGCAAAGTGCCGAGCAGCACAATCAAGATGTTAACTCGTTGGGGCTTATCTCTTCAAGAAAGACA GCAGAAGCTGTTGATATCTTGAAGCTCATGTCCACAACCTTCTTAGTGGCTCTTTGCCAAGCTATCGACTTGAGGCACTTGGAAGAGAACTTGAAGAGCG CAGTCAAGAACACAGTTAGTCAAGTATCCAAGAGGGTTTTAACTACAGGTGCCAACGGAGAACTTCACCCATCAAGGTTCTGTGAGAAGGAGTTGCTCAA GGTGGTTGATCGTGAATATGTCTTTGCCTATGTGGATGACCCCTGCAGTGCTACCTATCCATTGATGCAGAAACTAAGGCAAGTTTTTGTTGACCATGCG TTGGAAAATGGAGAGAACGAGAAGAATTTTAGCACTTCAGTCTTCCAAAAGATTGAAGCTTTCGAGGAAGAACTGAAGGCTCTTTTGCCAAAAGAAGTTG AGAGCGCAAGAGCAGCATATGATAGTGGGAATTCAGCAATTGACAACAAGATCAAGGAATGTAGGTCTTATCCACTGTACAAGTTTGTGAGGGAGGAGTT GGGAACTGTATTGCTCACTGGCGAAAAGGTCCAATCGCCCGGCGAGGAGTTCGACAAGGTGTTTACAGCTATGTGCCAGGGGAAGATCATTGACCCAATG CTGGAGTGCCTTGGGGAATGGAATGGTTCCCCTCTTCCTATCTGTTAA
AA sequence Show only first row Show all	>Potri.016G091100.1 pacid=42809643 polypeptide=Potri.016G091100.1.p locus=Potri.016G091100 ID=Potri.016G091100.1.v4.1 annot-version=v4.1 METVTKNGYQNGSLESLCVNQLDPLSWGVAAEAMKGSHLDEVKRMVADYRKPVVKLGGETLTIAQVASIAGHDTGDVKVELSESARPGVKASSDWVMDSM DKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITRLLNNNITPCLPLRGTIT ASGDLVPLSYIAGLLTGRPNSKATGPTGEVLDAAEAFKAAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSELLSAIFAEVMNGKPEFT DHLTHKLKHHPGQIEAAAIMEHILDGSAYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQ GTPIGVSMDNVRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKT AEAVDILKLMSTTFLVALCQAIDLRHLEENLKSAVKNTVSQVSKRVLTTGANGELHPSRFCEKELLKVVDREYVFAYVDDPCSATYPLMQKLRQVFVDHA LENGENEKNFSTSVFQKIEAFEEELKALLPKEVESARAAYDSGNSAIDNKIKECRSYPLYKFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPM LECLGEWNGSPLPIC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.016G091100 [exp]	0	1	PAL1.3,PAL4
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	1.00	0.8516	PSC450.2
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.006G126800 [exp]	4.69	0.7828	PAL3,Pt-PAL1.2
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	4.89	0.7766
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.012G036600 [exp]	6.48	0.7231
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.009G148800 [exp]	6.92	0.7422
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.001G177400 [exp]	11.18	0.6890	IAA8.3
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	12.24	0.6858
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	20.00	0.7151
AT2G14095			unknown protein		Potri.001G310100 [exp]	21.90	0.6964
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.008G161800 [exp]	27.56	0.7232

Compare expression of checked genes

Potri.016G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.