Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03290 643 / 0 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 618 / 0 IDH-VI isocitrate dehydrogenase VI (.1) AT4G35260 346 / 5e-118 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 333 / 6e-113 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 333 / 1e-112 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT1G32480 182 / 3e-56 IDH-IV isocitrate dehydrogenase IV (.1) AT5G14200 157 / 2e-44 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G31180 156 / 6e-44 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT1G80560 152 / 2e-42 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT5G14590 51 / 7e-07 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126700 [exp] 716 / 0 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.004G204300 [exp] 340 / 1e-115 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 340 / 1e-115 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 337 / 2e-114 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 337 / 3e-114 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.001G185600 [exp] 154 / 7e-43 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Potri.001G347800 [exp] 48 / 6e-06 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.017G144541 [exp] 45 / 8e-05 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 44 / 9e-05 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013806 [exp] 670 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 668 / 0 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 663 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 655 / 0 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10028374 [exp] 337 / 5e-114 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10041824 [exp] 336 / 9e-114 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 327 / 3e-110 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 303 / 5e-102 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10030344 [exp] 154 / 7e-42 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 145 / 2e-39 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [poplar] [flax] Iso_DH PF00180 [poplar] [flax] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.016G091200.2 pacid=42809166 polypeptide=Potri.016G091200.2.p locus=Potri.016G091200 ID=Potri.016G091200.2.v4.1 annot-version=v4.1 ATGGCCCTTGTGCAGGTGTTGAGGCGCGTTCTTGGTGCAAGCGGCTCCACCCAGATCTCCTCAACGGCTAGGGCTTTCTCTTCTGCTCCGGCTCCCATCA TAGCCACTCTCTTTCCCGGTGACGGTATCGGCCCCGAGATCGCCGAGTCCGTCAAACAGGTGTTTCAAGCAGCTGAGGTGCCAATTGAGTGGGAAGAGCA CTATGTTGGGGATCAAATAGATCCAAGAACCCAGAGTTTTCTGACATGGGAAAGTCTGGAGTCTGTACGAAGAAACAGGGTTGGCTTAAAAGGGCCAATG GCCACACCGGTTGGAAAAGGCCATCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTTAATTTGTATGCCAACGTTAGGCCTTGCTACAGCCTCCCTGGTT ATAAAACTCGGTATGATAATGTTAATCTTATCACTATTCGTGAGAATACGGAAGGAGAATACAGTGGACTTGAACACCAAGTGGTGAGAGGTGTAGTTGA AAGTCTCAAAATCATTACCCGTCAGGCAAGTTTGAGAGTTGCTGAATACGCTTTTCACTATGCAAAGACCCACGGACGAGAGAGAGTATCAGCTATACAC AAAGCTAATATTATGCAGAAAACTGATGGTCTTTTTCTCAAGTGCTGTCGTGAGGTTGCAGAGAAGTACCCTGAAATCACATATGAAGAAGTTGTTATTG ACAACTGCTGTATGATGCTTGTGAAGAATCCAGCTCTTTTTGATGTACTGGTGATGCCTAACCTCTATGGTGACATTATCAGTGACCTTTGTGCGGGGTT GGTTGGTGGTTTGGGCTTAACACCAAGCTGCAATATTGGTGAAGCAGGAATTGCCCTTGCTGAAGCTGTGCATGGTTCTGCACCTGATATTGCTGGCAAG AATTTGGCAAATCCCACTGCTCTACTGTTAAGTGCTGTCACAATGTTACGCCATTTAGAGCTCTATGACAAAGCGGAGAGGATCCAGGATGCCATTCTTA ACACAATTGCCGAGGGAAAGTATCGGACTGCAGACCTTGGTGGTTCTTCATCGACAACTGATTTTACGAAGGCAATCTGTGGTCATCTTTGA
AA sequence Show only first row Show all	>Potri.016G091200.2 pacid=42809166 polypeptide=Potri.016G091200.2.p locus=Potri.016G091200 ID=Potri.016G091200.2.v4.1 annot-version=v4.1 MALVQVLRRVLGASGSTQISSTARAFSSAPAPIIATLFPGDGIGPEIAESVKQVFQAAEVPIEWEEHYVGDQIDPRTQSFLTWESLESVRRNRVGLKGPM ATPVGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIH KANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSCNIGEAGIALAEAVHGSAPDIAGK NLANPTALLLSAVTMLRHLELYDKAERIQDAILNTIAEGKYRTADLGGSSSTTDFTKAICGHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	0	1
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	2.00	0.7769	ATS9.1
AT3G07910			unknown protein		Potri.001G277100 [exp]	3.87	0.7238
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	4.47	0.7750
AT5G10780			unknown protein		Potri.018G016800 [exp]	6.00	0.6645
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.016G028000 [exp]	7.48	0.7111	RPT1.2
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	8.48	0.7091
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	8.71	0.7352	RPT5.2
AT1G22520			Domain of unknown function (DU...		Potri.013G105766 [exp]	12.60	0.7354
AT1G61620			phosphoinositide binding (.1)		Potri.011G040000 [exp]	12.84	0.7021
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	12.96	0.6971	ATS9.3

Compare expression of checked genes

Potri.016G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.