Plant FIBer expression Database

Potri.016G091300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G091300.2 pacid=42810242 polypeptide=Potri.016G091300.2.p locus=Potri.016G091300 ID=Potri.016G091300.2.v4.1 annot-version=v4.1
ATGGCATGGGATGTTTTCCTTAGTTTGCAGAATGCCATTCCACATCATCACCAGTATGATTTCTTTCATCCAAACTGCAGAGAGCAGCATCGATCGCCTC
TTCCCAGGGCCATGAACCAACATAGAATCGGATCTCTAATAGTCAACCAAAAGATGTTGTATAAGGAAGATCTTAGCTGCTACATTGCGATGTTGTTGAA
GAAGAAACAATCTGAGCTACTACATGGAATCGAAATCAATCTAGGCTTTTTAATTGATTTCTCCCTTCCTGCAATGTTTGCTGTTGAAGAAGAAACAATT
TGTCTCTTGCGTTGTTAG
AA sequence
>Potri.016G091300.2 pacid=42810242 polypeptide=Potri.016G091300.2.p locus=Potri.016G091300 ID=Potri.016G091300.2.v4.1 annot-version=v4.1
MAWDVFLSLQNAIPHHHQYDFFHPNCREQHRSPLPRAMNQHRIGSLIVNQKMLYKEDLSCYIAMLLKKKQSELLHGIEINLGFLIDFSLPAMFAVEEETI
CLLRC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G091300
[exp]
0 1
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Potri.001G147000
[exp]
3.16 0.9104
AT1G04850 ubiquitin-associated (UBA)/TS-... Potri.001G316400
[exp]
3.46 0.9046
AT1G06530 PMD2 peroxisomal and mitochondrial ... Potri.002G060200
[exp]
4.58 0.8924
AT1G20970 unknown protein Potri.006G191500
[exp]
5.47 0.8889
AT1G15370 SNARE-like superfamily protein... Potri.001G193100
[exp]
6.00 0.9088
AT1G58110 bZIP Basic-leucine zipper (bZIP) tr... Potri.004G219100
[exp]
6.92 0.8824
AT5G03110 unknown protein Potri.016G086900
[exp]
7.34 0.8995
AT1G07980 CCAAT NF-YC10 "nuclear factor Y, subunit C10... Potri.009G012300
[exp]
9.48 0.8600
AT5G52280 Myosin heavy chain-related pro... Potri.015G143800
[exp]
9.89 0.8869
AT1G19430 S-adenosyl-L-methionine-depend... Potri.002G260600
[exp]
11.00 0.8880

Potri.016G091300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.