Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CDC48.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53230 1484 / 0 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 1469 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 1462 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 436 / 9e-141 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 409 / 2e-133 CDC48B cell division cycle 48B (.1) AT1G03000 259 / 1e-73 PEX6 peroxin 6 (.1) AT3G56690 257 / 1e-72 CIP111 Cam interacting protein 111 (.1) AT5G08470 240 / 1e-66 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G05910 233 / 5e-64 cell division cycle protein 48-related / CDC48-related (.1) AT2G20140 214 / 1e-61 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125500 [exp] 1544 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 1462 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 1450 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 1312 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 448 / 2e-145 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 422 / 8e-138 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 259 / 5e-74 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.006G035000 [exp] 251 / 2e-70 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.001G174100 [exp] 250 / 8e-70 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021442 [exp] 1496 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 1484 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1483 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 1479 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 1424 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 1384 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 774 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10039722 [exp] 427 / 1e-137 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10018033 [exp] 422 / 1e-137 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10020255 [exp] 433 / 7e-137 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [poplar] [flax] AcetylDC-like PF02359 [poplar] [flax] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [poplar] [flax] Cdc48_2-like PF02933 [poplar] [flax] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.016G091600.1 pacid=42809884 polypeptide=Potri.016G091600.1.p locus=Potri.016G091600 ID=Potri.016G091600.1.v4.1 annot-version=v4.1 ATGTCTAACCAAGCTGAATCCTCTGACTCTAAAGGAACAAAGAGGGATTTTAGTACCGCGATTTTGGAGAGAAAGAAGTCTCCGAATCGTCTTGTTGTTG ATGAGGCTATTAATGATGATAACTCTGTCGTTTCCCTTCATCCTGAGACTATGGAGAAGCTCCAGCTCTTTCGGGGTGACACCATCTTAATCAAGGGAAA GAAAAGGAAAGATACTATTTGCATTGCCCTTGCTGATGACTCATGCGATGAACCAAAGATCAGGATGAACAAGGTTGTGAGGTCAAACCTGAGGGTTAGG CTTGGAGACGTGGTATCTGTACACCAGTGTCCTGATGTCAAGTATGGAAAACGCGTGCACATCTTGCCCATTGATGACACAATTGAAGGGGTCACTGGAA ATCTCTTTGATGCATACTTGAAGCCTTATTTCTTGGAAGCATATCGCCCAGTGAGGAAGGGTGACCTCTTCCTTGTACGAGGGGGAATGAGAAGTGTGGA ATTCAAAGTTATTGAAACTGACCCTCCGGAGTACTGCGTGGTTGCTCCAGACACTGAGATCTTCTGTGAGGGAGAGCCCGTGAGAAGAGAGGATGAGGAT AGATTGGATGAAGTTGGTTATGATGATGTTGGTGGTGTTAGAAAACAAATGGCTCAGATTCGGGAGTTGGTGGAGCTTCCTTTGAGACACCCACAACTAT TCAAATCAATTGGTGTTAAACCACCAAAAGGAATTCTGCTGTATGGACCTCCTGGTTCTGGGAAGACTCTAATTGCCCGAGCTGTTGCAAATGAAACTGG TGCTTTTTTCTTCTGTATTAATGGACCTGAAATTATGTCAAAGTTGGCTGGAGAGAGTGAAAGTAATCTCAGAAAAGCATTTGAGGAAGCAGAGAAAAAT GCACCTTCAATTATATTTATTGACGAAATAGATTCAATTGCCCCCAAGCGAGAGAAAACAAATGGAGAGGTTGAGAGGAGAATTGTTTCCCAACTTTTGA CACTCATGGATGGACTAAAATCCCGTGCACATGTTATTGTCATGGGGGCTACAAATCGGCCCAATAGCATTGACCCTGCTCTGAGGAGGTTTGGGAGATT TGATAGGGAAATTGATATTGGTGTTCCAGATGAAGTTGGGCGCCTAGAGGTTCTTCGTATTCATACTAAGAACATGAAGCTTGCTGAGGATGTTGATTTG GAAAGAATAGCCAAGGATACCCATGGTTATGTTGGTGCTGACTTAGCAGCTCTTTGCACCGAGGCTGCGCTTCAATGCATCAGAGAAAAGATGGACGTGA TTGACTTGGAAGATGAGACAATAGATGCTGAAATACTCAACTCAATGGCAGTGACTGACGAACACTTCAAGACTGCTCTTGGAATAAGCAACCCATCTGC ATTGCGTGAAACAGTTGTTGAAGTTCCTAATGTTAGTTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAGCTCCAGGAGACTGTTCAATATCCA GTGGAGCACCCTGAGAAATTTGAGAAGTTTGGAATGTCACCATCAAAGGGAGTTCTGTTCTATGGCCCTCCAGGATGTGGGAAAACCCTTCTGGCTAAAG CTATTGCCAATGAATGCCAGGCAAACTTCATTAGTGTCAAGGGTCCTGAATTGCTTACAATGTGGTTTGGTGAGAGTGAGGCCAATGTACGAGAAATTTT TGACAAAGCTCGCCAATCTGCTCCTTGTGTCTTGTTCTTTGATGAACTTGACTCAATTGCAACTCAGAGAGGAAGCAGCGTAGGAGATGCTGGGGGTGCT GCTGATAGAGTTTTGAACCAGCTTCTGACGGAGATGGATGGCATGACTGCAAAGAAAACTGTTTTCATAATTGGGGCCACAAACAGACCCGACATCATAG ACCCTGCCCTATTGCGTCCTGGGCGTCTTGATCAGTTGATCTATATCCCTCTTCCTGATGAGGAGTCACGCTTTCAAATATTCAAATCTTGCTTGAGGAA ATCACCAGTCTCCAAAGATGTTGACCTCAGAGCACTTGCCAAGTACACACAGGGTTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGTGCTTGCAAA TATGCCATAAGAGAGAACATTGAGAAAGATATTGAGAAGGAGAGGAGGCAAAAAGAGAACCCTGAGGCTATGGAGGAAGATGTTGAGGATGAGGTGGCAG AGATCAAGGCAGCACATTTTGAGGAATCCATGAAATATGCCCGTCGGAGTGTTAGTGATGCTGACATCCGGAAGTATCAGGCATTTGCTCAAACACTGCA ACAGTCAAGAGGGTTTGGAACTGAATTCAGGTTTGCTGAAGCTAGTGCTGGGTCCGATCCGTTTGCAGCTTCTGCTGGCGGAGCTGATGAAGATGACCTT TACAGTTAA
AA sequence Show only first row Show all	>Potri.016G091600.1 pacid=42809884 polypeptide=Potri.016G091600.1.p locus=Potri.016G091600 ID=Potri.016G091600.1.v4.1 annot-version=v4.1 MSNQAESSDSKGTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPETMEKLQLFRGDTILIKGKKRKDTICIALADDSCDEPKIRMNKVVRSNLRVR LGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDED RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDL ERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGISNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYP VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA ADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQIFKSCLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACK YAIRENIEKDIEKERRQKENPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAEASAGSDPFAASAGGADEDDL YS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53230			ATPase, AAA-type, CDC48 protei...		Potri.016G091600 [exp]	0	1	Pt-CDC48.2
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	2.82	0.7139	TFIIB1.2
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	5.91	0.7580	NFU4.2
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.006G055000 [exp]	17.97	0.6738
					Potri.008G177350 [exp]	21.49	0.6161
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.012G081700 [exp]	25.29	0.7094
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	27.34	0.6219	CDC48.3
AT1G43760			DNAse I-like superfamily prote...		Potri.003G186650 [exp]	29.34	0.6961
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Potri.010G253500 [exp]	30.00	0.6771
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Potri.002G106900 [exp]	30.49	0.7005
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G011300 [exp]	32.84	0.6831

Compare expression of checked genes

Potri.016G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.