Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2) AT3G12780 183 / 1e-50 PGK1 phosphoglycerate kinase 1 (.1) AT1G79550 170 / 1e-46 PGK phosphoglycerate kinase (.1.2) AT5G17660 133 / 2e-34 tRNA (guanine-N-7) methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G084500 [exp] 181 / 8e-50 AT1G56190 768 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.010G171500 [exp] 179 / 4e-49 AT1G56190 769 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.008G084400 [exp] 168 / 8e-46 AT1G79550 717 / 0.0 phosphoglycerate kinase (.1.2) Potri.010G171600 [exp] 167 / 2e-45 AT1G79550 718 / 0.0 phosphoglycerate kinase (.1.2) Potri.013G070800 [exp] 150 / 2e-40 AT5G17660 344 / 5e-119 tRNA (guanine-N-7) methyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031744 [exp] 193 / 4e-54 AT3G12780 757 / 0.0 phosphoglycerate kinase 1 (.1) Lus10031168 [exp] 192 / 7e-54 AT3G12780 758 / 0.0 phosphoglycerate kinase 1 (.1) Lus10031743 [exp] 165 / 1e-44 AT1G79550 715 / 0.0 phosphoglycerate kinase (.1.2) Lus10031167 [exp] 152 / 9e-41 AT1G79550 621 / 0.0 phosphoglycerate kinase (.1.2) Lus10015923 [exp] 144 / 2e-38 AT5G17660 366 / 5e-128 tRNA (guanine-N-7) methyltransferase (.1) Lus10020164 [exp] 43 / 0.0006 AT5G24840 412 / 1e-147 tRNA (guanine-N-7) methyltransferase (.1) Lus10026965 [exp] 42 / 0.0007 AT5G24840 412 / 2e-147 tRNA (guanine-N-7) methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00162 [poplar] [flax] PGK Phosphoglycerate kinase CL0063 [poplar] [flax] NADP_Rossmann PF02390 [poplar] [flax] Methyltransf_4 Putative methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.016G091800.10 pacid=42810431 polypeptide=Potri.016G091800.10.p locus=Potri.016G091800 ID=Potri.016G091800.10.v4.1 annot-version=v4.1 ATGTGTCAACTTCTAAATTCAGTGGATGGAACTCTATCCTTATTAAACAAGTTAACGTTTTATGCTTTTCCTACCAAAACATCGGAGTTTCTTCATCCAA AATCTTCTCCATACCTCGGAAACAAGACTGCCAAACGTTGGAGATTTCGTGGTGTTCGATCACTATCCTTACAAGGTGGTTCAGAGGCAGCAGATCATGT CAAAAGCTCTAACAAATTTAAGACTAATTGTTGTGATGAAGGAGAAATGGAGCCTTTCCCACATGTACAAACTCTTAGAAAATTTCCTAAGGAGGAGCTG GTGGGAAAAGTGGTCATGGTCAGATTTGATAGTACCAATTTACTTAGGGAAGAAGAACAGGACCAGAGCTCTCAATCAGTGTCAAGTGCAGTTTTCACGA TTAAATATCTACATGAAGCTGGAGCAAAAATAATTCTTGTGAGTGACTGGAGGAAGAAAACTAATTCGCAGCTTCATGATGCTGAGACTGTTGCAGACAT GTTATCATCAGTTATCCAACACAGAGTTGTTACCATTAAATGCGATTATTCTGCTGTGTTGTTGAAAATGGAAGTCCTGAAGAAAGCAGATATATTCCTT CTTGAGAACCTTTCAGAGTACAAAGAGGAAGTTGCCAATAATTCAAAGTTTGCTGAACTATTATCATCAGGAGTTGATATTTTTGTTAATGACTCCTTTT CGCAGTCTCATAAAATTCTTGCATCTACAGTTGGTATTGCTCGCTTTTGTTCTGCTTGTATAGCTGGTTTTCACTTTGAAGAGAGCCTTTGTCAGCTGAA GAAGGTTGCTAGAACTAACAAAAGACCATATGTTGCAATTATTGGAGGGGGTAATCTCTATGACAAAGCATCTGCATTGCATTTTTTAGTCTCCAGATGT GATGGACTGGTCTTTGTTGGGATGATGTCATTCCAAATAATGCATGCTTTGGGACTTTCTGTTCCTTCATATCTGGTAGAACCCGGGGCGTATAAAGCAG CTTTAGATATAATCCAAATTGCACATGATAGAAACATTCCCATTCTACATCCCATGGATTTTTGGTGCATGAATGAGCATCTTCCAGAGAAAATGGACAT ATTTCCTTCTCATCATATTTTGGATGGTTGGCTACCTGTTGATCTTGGTCCTCGGTCATTGGATGAATTAAACTCTTTACTAGTGAAATGCAAGAAAATT CTATGGATTGGTCCAGTGAAATTCAAGTTCTCAGGTCAATGTGCAGACGGAGCATCTAAATTGGCTCAAGCACTTAATGATCTAAGGCAAAGAAATTGTG ATATCACTGTGGCGGGGAATATGGCATGCCAAGCAATGGTGATGGAATCAAAGTCTGTCTTGGTTAATGACATGATTGAAAATGCTTCAGTTCTATGGGA ATTTTTCAAAGGAAGAAAGCTTCCCGGGGTTATGGCCTTAGATAGAGCATATCCATTTGAGATCGATTGGAAGTCTGCCTATTGTAATCCAGCTCAACCA TTGGTGGTTGATATTGGAAGTGGTAGTGGACTATTTCTTTTGGGGATGGCTAGGAGAAGAAAGGATTTGAATTTTCTTGGTCTAGAAATCAATTCAAAGC TTGTAAGACGCTGTATGGATTCTGTTCATCAGTATGGCATTCAAAATGGGTACTTCATTGTAACAAATGCTACAACAACATTTCGTTCCATAGTTTCGAG TTATCCAGGAGAGTTGGTCCTTGTTTCGATACAGTGTCCCAACCCTGATTTCAACAATCCAGAACATAGATGGAGAATGCTGCAAAGGTCATTGATTAAA GCTGTGGTGGATCTCCTTGCACTGGATGGGAAGGTTTTCCTGCAATCTGACTTAGAAGCAGTTGCTTTGAGAATGAAAGAATTATTTCTCAAAATTGGCA AGGGCAAGCTCAATCTATGGAATGATCAATACCATGCAAGAATGAATCTCGGGGAATGGCTTGAAGAGAACCCATTTGGAGTTATGTCAGATTGGGAGCA ACATGTTATTGATCGTGGGGACCCTATGTACAGATTGATGCTTTCCAAATCATCCGGTATCGAATGA
AA sequence Show only first row Show all	>Potri.016G091800.10 pacid=42810431 polypeptide=Potri.016G091800.10.p locus=Potri.016G091800 ID=Potri.016G091800.10.v4.1 annot-version=v4.1 MCQLLNSVDGTLSLLNKLTFYAFPTKTSEFLHPKSSPYLGNKTAKRWRFRGVRSLSLQGGSEAADHVKSSNKFKTNCCDEGEMEPFPHVQTLRKFPKEEL VGKVVMVRFDSTNLLREEEQDQSSQSVSSAVFTIKYLHEAGAKIILVSDWRKKTNSQLHDAETVADMLSSVIQHRVVTIKCDYSAVLLKMEVLKKADIFL LENLSEYKEEVANNSKFAELLSSGVDIFVNDSFSQSHKILASTVGIARFCSACIAGFHFEESLCQLKKVARTNKRPYVAIIGGGNLYDKASALHFLVSRC DGLVFVGMMSFQIMHALGLSVPSYLVEPGAYKAALDIIQIAHDRNIPILHPMDFWCMNEHLPEKMDIFPSHHILDGWLPVDLGPRSLDELNSLLVKCKKI LWIGPVKFKFSGQCADGASKLAQALNDLRQRNCDITVAGNMACQAMVMESKSVLVNDMIENASVLWEFFKGRKLPGVMALDRAYPFEIDWKSAYCNPAQP LVVDIGSGSGLFLLGMARRRKDLNFLGLEINSKLVRRCMDSVHQYGIQNGYFIVTNATTTFRSIVSSYPGELVLVSIQCPNPDFNNPEHRWRMLQRSLIK AVVDLLALDGKVFLQSDLEAVALRMKELFLKIGKGKLNLWNDQYHARMNLGEWLEENPFGVMSDWEQHVIDRGDPMYRLMLSKSSGIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.001G034600 [exp]	1.73	0.8344
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Potri.018G081500 [exp]	5.47	0.8056
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.013G108600 [exp]	6.16	0.8111
AT1G10600		AMSH2	associated molecule with the S...		Potri.010G041200 [exp]	6.70	0.8062
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Potri.003G078300 [exp]	14.07	0.7499
AT3G62620			sucrose-phosphatase-related (....		Potri.002G198200 [exp]	14.49	0.7628
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	14.69	0.7692
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	14.73	0.7979
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.010G136700 [exp]	14.83	0.7910
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	15.42	0.7695

Compare expression of checked genes

Potri.016G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.