Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34340 246 / 6e-79 TAF8 TBP-associated factor 8 (.1) AT3G02160 169 / 5e-49 Bromodomain transcription factor (.1) AT5G15570 150 / 6e-42 Bromodomain transcription factor (.1) AT1G31240 92 / 6e-21 Bromodomain transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125200 [exp] 538 / 0 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1) Potri.004G116200 [exp] 265 / 6e-86 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1) Potri.017G094900 [exp] 262 / 4e-85 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1) Potri.015G118200 [exp] 111 / 3e-28 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1) Potri.012G119500 [exp] 107 / 7e-27 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013818 [exp] 386 / 1e-133 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1) Lus10026530 [exp] 377 / 5e-130 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1) Lus10040612 [exp] 100 / 3e-24 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1) Lus10018295 [exp] 97 / 5e-23 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF07524 [poplar] [flax] Bromo_TP Bromodomain associated CL0012 [poplar] [flax] PF10406 [poplar] [flax] TAF8_C Transcription factor TFIID complex subunit 8 C-term
Representative CDS sequence Show only first row Show all	>Potri.016G092000.2 pacid=42809365 polypeptide=Potri.016G092000.2.p locus=Potri.016G092000 ID=Potri.016G092000.2.v4.1 annot-version=v4.1 ATGAGCAATGGAGGTGAAGAGAATACACCGGGAAGACCCAAATCCGATGACTTTGGCCGCGCTGTATCAAGAATGGCAGTGGCTCAGATATGTGAGAGTG CGGGCTTTGATGGGTTCAAGAAATCTGCTCTGGATTCTCTCAGTGATGTCACAATCCAATACCTCTGTGACCTAGGCAAGACTGCAAGATTCTACGCCAA CTTATCAGGTAGAACCCAATGTCATTTCTTTGATATAGTTAGAAGTTTTGAAGATATAATAATAGGAGCTTCACACGGGTTTTTAGGTGCGTCCAGTTCT GATAATTGTCTAGTTAATTCTGGTACGATTAAAGAACTTATTGATTTTGTGGGTTCTAATGATGAGATTCCATTTGCGCAACCAGTGCCAAGGTTTCCTG TTATTAGGGATAGAAAGTTAATTCCTACTTTTGAAAAAATGAGTGAAGTTCCGCCTGGGAAGCATATCCCGGCATGGTTGCCAGCTTTGCCCGATCCTCA CACGTATTTGCATACACCTATGTGGAATGAGAGGCTTGTAGATCCTCGTGCAGAAACGATCGAGCAAGCGAGACAGAGGAGAAAGGCAGAGAGGGCTTTG TTGAGTTTGCAGAAGAGGTTGTTGAGTAATGGCTCAGCAGGGGCTTCATCCTCAGGGATTAGTAATAATGTTAAAGAGTCAGGAGTAGTTGATAGTGGTC AGTTTCTTGCCATGCCATCAGAGTCTGTGAAGAAGGATGTTTCTCCAGTTGTGTTGTCAGATAAGCTAAAAAACCATATTTCTGTGATGCAGGCATTTGC ACCTGCTATTGAAGCAGCAAAAGAAGGTGGAATTTGTGACGATGGAGATTTTGAGAGGAAGACACTTCCGGAAAAAAGACCTGCTGTGATTTTTAAGTTT AAGACTGGAAAGAAGTTGCTTGGAGAGTCTTTGGATCTGAGTCTTTCGAAGAAGGGTGGGAGGAGAACAGGGCATTGGTTAGGGCGGGATGACGAGAGGG ATGACAAGAAGAGGAGAGCAGAGTATATACTTAGGCAGTCAATGGAAAACCCTCAAGAACTTACACAGTTGTAA
AA sequence Show only first row Show all	>Potri.016G092000.2 pacid=42809365 polypeptide=Potri.016G092000.2.p locus=Potri.016G092000 ID=Potri.016G092000.2.v4.1 annot-version=v4.1 MSNGGEENTPGRPKSDDFGRAVSRMAVAQICESAGFDGFKKSALDSLSDVTIQYLCDLGKTARFYANLSGRTQCHFFDIVRSFEDIIIGASHGFLGASSS DNCLVNSGTIKELIDFVGSNDEIPFAQPVPRFPVIRDRKLIPTFEKMSEVPPGKHIPAWLPALPDPHTYLHTPMWNERLVDPRAETIEQARQRRKAERAL LSLQKRLLSNGSAGASSSGISNNVKESGVVDSGQFLAMPSESVKKDVSPVVLSDKLKNHISVMQAFAPAIEAAKEGGICDDGDFERKTLPEKRPAVIFKF KTGKKLLGESLDLSLSKKGGRRTGHWLGRDDERDDKKRRAEYILRQSMENPQELTQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Potri.016G092000 [exp]	0	1
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291932 [exp]	36.33	0.7578
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	41.41	0.7387
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G271200 [exp]	67.61	0.7468
AT5G26800			unknown protein		Potri.005G011800 [exp]	132.77	0.7014
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	236.64	0.7048

Compare expression of checked genes

Potri.016G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.