Plant FIBer expression Database

Potri.016G092300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52970 292 / 4e-101 thylakoid lumen 15.0 kDa protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023013
[exp]
297 / 6e-103 AT5G52970 319 / 1e-111 thylakoid lumen 15.0 kDa protein (.1)
Lus10001399
[exp]
282 / 8e-97 AT5G52970 278 / 3e-95 thylakoid lumen 15.0 kDa protein (.1)
PFAM info
Representative CDS sequence
>Potri.016G092300.2 pacid=42809953 polypeptide=Potri.016G092300.2.p locus=Potri.016G092300 ID=Potri.016G092300.2.v4.1 annot-version=v4.1
ATGGCATTTCCCCATCTTCCTTCATCTCTTGCACTCAAAACTACTTGCCGCTCTGCATTGACACCAGTACCCATCACTGTCTCGTCTCGACCAATCCAAA
ATCCTGCTAAATTCACCAATTGGGTCCTCGATTTCCGTTCCAAATCTTTGAATTTTGCCTTCTCTGGGGCTCTCGCGCTTGGTCTATCTCTCCCAGGAGT
TGGAGTTGCTGACGCAAAAGTTGGAGTTAACAAGCCAGAACTCCTTCCTAAAGAGTTTACTACTGTTATAGATGTAGCTGGGTTCCTTTCTGATGGCCAG
GAGAAACGACTTGCAGAGGAGATTTCTGATATTGAAAAGGATACCGGATTCAAATTAAGAGTTTTAGCTCAGAATTATCCTGACACACCTGGATTGGCGA
TTAGAGACTTTTGGCAAGTGGATGATAGAACAGTTGTCTTTGTTGCTGACCCCAACTTTGGAAATATTTTAAATTTCAATGTGGGGGCATCTGTTGATCT
AGACATTCCCCGTAGCTTCTGGAGCCGTTTGGCTGGGAAATATGGAAACATGTTTTACTGGAAAGAGAAGGGGGAAGATGCTTCTATTGAAGCTGCTGTG
ATGGCAATCTCCAGTTGCTTGAGGGAACCTGTGGGCCCAAATAATTGCTCTGAGGTGAAATGA
AA sequence
>Potri.016G092300.2 pacid=42809953 polypeptide=Potri.016G092300.2.p locus=Potri.016G092300 ID=Potri.016G092300.2.v4.1 annot-version=v4.1
MAFPHLPSSLALKTTCRSALTPVPITVSSRPIQNPAKFTNWVLDFRSKSLNFAFSGALALGLSLPGVGVADAKVGVNKPELLPKEFTTVIDVAGFLSDGQ
EKRLAEEISDIEKDTGFKLRVLAQNYPDTPGLAIRDFWQVDDRTVVFVADPNFGNILNFNVGASVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAV
MAISSCLREPVGPNNCSEVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52970 thylakoid lumen 15.0 kDa prote... Potri.016G092300
[exp]
0 1
AT2G23560 ATMES7 ARABIDOPSIS THALIANA METHYL ES... Potri.007G036800
[exp]
2.00 0.9787
AT5G45680 ATFKBP13 FK506 BINDING PROTEIN 13, FK50... Potri.001G075500
[exp]
4.00 0.9716
AT5G14320 EMB3137 EMBRYO DEFECTIVE 3137, Ribosom... Potri.005G172600
[exp]
9.94 0.9725
AT5G21430 NdhU, CRRL NADH dehydrogenase-like comple... Potri.006G221900
[exp]
10.39 0.9695
AT1G03600 PSB27 photosystem II family protein ... Potri.002G056300
[exp]
10.48 0.9676
AT2G01755 unknown protein Potri.008G135400
[exp]
11.83 0.9626
AT4G39710 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex... Potri.005G079700
[exp]
12.24 0.9689
AT2G02500 MCT, ATMEPCT, I... 2-C-METHYL-D-ERYTHRITOL 4-PHOS... Potri.004G230200
[exp]
13.56 0.9475
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G058400
[exp]
14.49 0.9692 PtrTrxm3
AT4G19100 PAM68 photosynthesis affected mutant... Potri.001G132001
[exp]
15.96 0.9712

Potri.016G092300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.