Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 502 / 7e-161 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 493 / 1e-158 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 485 / 8e-155 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 470 / 5e-149 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 462 / 7e-146 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 456 / 2e-143 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 451 / 2e-142 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 437 / 2e-136 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 434 / 1e-134 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 419 / 1e-129 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G014232 [exp] 1144 / 0 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014066 [exp] 762 / 0 AT1G53420 272 / 3e-79 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011601 [exp] 709 / 0 AT1G53440 571 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G012150 [exp] 691 / 0 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G061500 [exp] 687 / 0 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 687 / 0 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011200 [exp] 685 / 0 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155150 [exp] 650 / 0 AT1G53440 543 / 1e-176 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011400 [exp] 645 / 0 AT1G53440 507 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 484 / 2e-154 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 479 / 9e-151 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10038153 [exp] 466 / 9e-147 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 452 / 9e-143 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 428 / 6e-134 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 416 / 1e-127 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 353 / 2e-106 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 348 / 2e-105 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 219 / 6e-63 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 219 / 7e-63 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G092700.6 pacid=42810182 polypeptide=Potri.016G092700.6.p locus=Potri.016G092700 ID=Potri.016G092700.6.v4.1 annot-version=v4.1 ATGGGTTCTGAACGGTCAGTAATGCTCATCAACAGACTTTTTCTCCTTAACTTTCTTCTTGTCTGGCAACTTGGCTGTGGGACTATTACTTTTAATGATA GCATCGAAGAAGTCGCACGCAGTAGATCAATTCCAGATGATGAAGTACGAGCTCTTCGACTCCTTTCACAGAATTTGCAGTCATCTTCCACACAGTTACC GCTGGCATCTTCCACACAGTTATCGCTGTCGTTTCCTATTTGTTCTGACAACCAGTATGCCGAGATCAAATGTGGTTCCCCTGACAACACCAAAAATGGA TCGTTTGGTTGGGTCACTGAAATAAACTTGCCAGGAAAAAAGTTGGATGGATACATTCACAATTCAATAGGTCGCTTCAAAAACTTGAAAAAACTTAATC TTTACAATAATCAGCTTTCTGGTGGGATTCCTTCAACGCTGGGGCAATTACAGCATCTCAAGTATTTGTACCTTTCAAGCAATTCGTTGACCGGGTCTAT ACCTCCAAGCCTGACAATGTTGCGGAATCTTACAGTACTGGATCTTTCCAGCAACGATCTTGATGGCACCATCCCTTCGAATCTGACGGGTCTACAATCG CTTCGTATATTGTATCTTTCCCGGAATAAATTGACTGGGCCAATACCAGACAGCATACGATATTGTCAAAACTTGACAGATATCTATGCCGACCGCAACT TTCTCAATGGTACTATAAACAAAAGTTTGGGCACACTCTCTTCACTTGAATCTCTGGGTCTTTATTATAACTCGTTGTCAGGCGGTATTCCAAAAGAATT AGGAAAACTGTCTGCACTCCAGTATTTGGCCCTGGATGGCAATGATCTTCATGGTGAACTTCCGAAGGAGCTTGGAAATTTAACCAACCTTCGAATCCTA TACCTGACAGCGAATAATTTTAATGGGACAATTCCTACGACATATGCGAAGCTGACCAATCTTGAAGTGTTTGCGGTAAGTGGAAACTATTTGTCTGGTC CGATACCTGCTTATATTGGAAAATGGGTGAACCTCAACGATCTGGTCCTGATAGGAAATAATTTTTCAGGGAATCTGCCTGCAGAAACTTTTAGTCTGAC AAAATTACAGACATTGTGGGTGAGTGATGTAAACAATCCCGGAATATCTTTCCCTGAAGAAGTCATACCGGAGCCCAAATATCTGTCTTCTGTGGTTCTG AGAAATTGCAATATTAATGGTCCAATACGCGAATACATTGGCAAGTGGCCTGAGTTATCATATCTTGATTTGAGCTTCAACAACTTAAATGGTAGCATTC CAGAAACATTTCAGAAACTGACAAAGTTATTTTTAACAAGAAACATGCTTACGGGGCTTCCTTCATGGATCACTAATCCGAAGAAATCGAAAAACAGTCG TCCTACAGTGGATCTTTCTTACAATAACTTCAACGTGTCATGTAAAAATATAAAGTGCTTGGGACTGCAAAATGTAACCATTCACCCGACAAGGTCTTTC ATAGATGAGATGAAGAGCAAAAAATGTCGTCGAAAGCATAATTCCCTGTTTATAAATAGTGGTGGTGAGGATGTATATTACGGAAAGGATCATTATCATA ACGATACCTCCATATCAAGTTTTAATCTTAGTCCATCTGATGATTGGGCTTATAGCTATGCTGGGGACATCGATGCCAGTGCTTCAGTAATAAACTCGAC ATGTGAATTTACTAGCGCTAAGGCAGACATAGATAACAATTTTCGCCTTGCTCCCGTCTCTCTAACGTATTATGGCCTCTGCTTGCGTAAAGGCGAGTAC ATTGTGACACTTTATTTTGCTGAAGCATTATATTCTAAGAGTGAAGATTACAGCACATCAGGAAAACGAGTGTTTGATATATATATTCAGGGAACGAATG TAAGGCCAGATGTCAACATAAAGGAAATCTATGGGAAAGAACATGAAGGAAAACAGCTAAATTTCTCGGTTAAAATAAATGATGGTTCGTTAGAGATCCA GCTCTTCTGGGCTGGCAAAGGATCTCTATACGGACCAGCTCGCAACGGACCTCTCATATCAGCCGTTTCCATCACTCGTGTTCCAAGAAAACTATATCCT TGGGAAATTGCGTTGATTATAGGATGCTGTATTTTGTTTCTGCTGCTGTTGCTGGCCTTCATGTGGAGAATGGGCTGGATAGGTGACAGAGAATTTCGAG AAACCAAAGTGAAGATTGGAGAAAGAACTTTCACCCTTAAACAGATCATTCATGCAACAAAAAAATTTAGCCCCAAGATGCAGCTTGGTAGCGGACGTTC AGGGATAGTATACAGGGCTGAATTACCAGATCTGACTGTAGCAGTGAAGAAGCTATTCACTCATTCAAAAGCAGTAGATGAAATAGGAAGTGAAGTTTAT GCCAGGAAGGCCTTGGACTTGAAACATGAAAACCTTGTTAATTTGATTGCTAGTTATTCCAGAAGGCACCTAATTTTGCTCATCTACGAATATATGGAAC ATGGCTCACTTGGACAAGTTTTATTTGGTACAAATCCCACTGTGCAAATTGATTGGCAGAAAAGATTTACAATCTGCAGGGGAATAGCGAAGGGTTTGAA GTATCTTCACGAAAGGAATCCACCAATAATTCACAGAAACATAAAAGCCAATAATATTCTGCTTGATGCAAGTTGTAATCCGAAAATATCAGATTTTGGA TTGGCAAAGCTTTATGAAGAGGAGAATCCATATATTGCGATTGGAGCAGGAGGAGATCTTCTATACATGTCACCAGAGTATGCAACCCGGAGAGCCATGA CGGTGAAAGTCGACGTCTACAGTTTTGGGATCCTTCTCCTTGAAATCGTTAGTGGGAGAAATAATGCTGACTACAGAGCAAACCAAGAAACTGTTTTTCT TCTAGATACGGCTGGTAATTTAAATGCGCGGGGAAGGCTAGGAGACTTAGTTGACCCAAGCTTGCGCACTTATGACTGGGACCAAGCGAAAATTGTCCTG AACTTGGCAATGATGTGCACCGATCAATCACCTTCTCTCAGGCCTACAATGTCTCAAGTAGTGGCTGTACTTGAAGGCGAAAAAACTCTCGAGGATCTCT CTAAAGAGATCGCTCCCTCGACATGA
AA sequence Show only first row Show all	>Potri.016G092700.6 pacid=42810182 polypeptide=Potri.016G092700.6.p locus=Potri.016G092700 ID=Potri.016G092700.6.v4.1 annot-version=v4.1 MGSERSVMLINRLFLLNFLLVWQLGCGTITFNDSIEEVARSRSIPDDEVRALRLLSQNLQSSSTQLPLASSTQLSLSFPICSDNQYAEIKCGSPDNTKNG SFGWVTEINLPGKKLDGYIHNSIGRFKNLKKLNLYNNQLSGGIPSTLGQLQHLKYLYLSSNSLTGSIPPSLTMLRNLTVLDLSSNDLDGTIPSNLTGLQS LRILYLSRNKLTGPIPDSIRYCQNLTDIYADRNFLNGTINKSLGTLSSLESLGLYYNSLSGGIPKELGKLSALQYLALDGNDLHGELPKELGNLTNLRIL YLTANNFNGTIPTTYAKLTNLEVFAVSGNYLSGPIPAYIGKWVNLNDLVLIGNNFSGNLPAETFSLTKLQTLWVSDVNNPGISFPEEVIPEPKYLSSVVL RNCNINGPIREYIGKWPELSYLDLSFNNLNGSIPETFQKLTKLFLTRNMLTGLPSWITNPKKSKNSRPTVDLSYNNFNVSCKNIKCLGLQNVTIHPTRSF IDEMKSKKCRRKHNSLFINSGGEDVYYGKDHYHNDTSISSFNLSPSDDWAYSYAGDIDASASVINSTCEFTSAKADIDNNFRLAPVSLTYYGLCLRKGEY IVTLYFAEALYSKSEDYSTSGKRVFDIYIQGTNVRPDVNIKEIYGKEHEGKQLNFSVKINDGSLEIQLFWAGKGSLYGPARNGPLISAVSITRVPRKLYP WEIALIIGCCILFLLLLLAFMWRMGWIGDREFRETKVKIGERTFTLKQIIHATKKFSPKMQLGSGRSGIVYRAELPDLTVAVKKLFTHSKAVDEIGSEVY ARKALDLKHENLVNLIASYSRRHLILLIYEYMEHGSLGQVLFGTNPTVQIDWQKRFTICRGIAKGLKYLHERNPPIIHRNIKANNILLDASCNPKISDFG LAKLYEEENPYIAIGAGGDLLYMSPEYATRRAMTVKVDVYSFGILLLEIVSGRNNADYRANQETVFLLDTAGNLNARGRLGDLVDPSLRTYDWDQAKIVL NLAMMCTDQSPSLRPTMSQVVAVLEGEKTLEDLSKEIAPST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G092700 [exp]	0	1
					Potri.010G008053 [exp]	3.00	0.9069
					Potri.003G153332 [exp]	3.00	0.8598
					Potri.003G153266 [exp]	7.34	0.8460
					Potri.010G007976 [exp]	12.96	0.8496
					Potri.010G008020 [exp]	14.96	0.8575
					Potri.010G008009 [exp]	15.29	0.8703
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G008800 [exp]	17.83	0.8540
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136303 [exp]	23.49	0.7222
					Potri.010G008042 [exp]	25.69	0.8349
AT1G05700			Leucine-rich repeat transmembr...		Potri.019G094250 [exp]	28.19	0.8561

Compare expression of checked genes

Potri.016G092700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.