Plant FIBer expression Database

Potri.016G093000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03370 117 / 6e-33 acylphosphatase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G124966
[exp]
130 / 2e-39 AT5G03370 107 / 3e-31 acylphosphatase family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026533
[exp]
123 / 3e-35 AT5G03370 141 / 6e-43 acylphosphatase family (.1)
Lus10013820
[exp]
122 / 9e-35 AT5G03370 135 / 1e-40 acylphosphatase family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0622 Acylphosphatase PF00708 Acylphosphatase Acylphosphatase
Representative CDS sequence
>Potri.016G093000.1 pacid=42809291 polypeptide=Potri.016G093000.1.p locus=Potri.016G093000 ID=Potri.016G093000.1.v4.1 annot-version=v4.1
ATGGCATCAGCAATGCCATCAACTACTACAACTACTACTCTCAGGCCACTGTTTATCAGCCAACAAAGACCCACCAGATTCTTCTTCGTAACATCCGGAA
TCAAATTTCCCGATAAAAAATGGATCGACAACAAAAACAAAAACAATTACTACCACCATAAGAATGTTAGTGCTTATCCTGGATTCCCCGTTCTCACTTC
TTGTAGCTCTTATTCTCTTCATTCTTTTCTTTCGCTTCGCTCTCCTTCTCTTCTTTCTCATCCTTCTCTTTGCTTTCTGTTCCAATCTCGTTCTCCTCCT
CTTCGATCTCCTTTCTCCTACATGACCACGACTAATCAATCCTCTCCTGACCCTCCTCCTCAATCACCCTCTACCAAAACGGTGAGGGTAGTGGTTAAGG
GGAGGGTACAGGGGGTCTTTTATAGGAACTGGACAGTGGAAAATGCTACGCAATTGGGGTTAAAAGGTTGGGTGAGGAACAGAAGGGATGGTTCTGTGGA
GGCTTTATTCTCTGGGGATTCTGATAAGGTACAGGAAATGGAGCAGAGGTGCCGCCGTGGCCCACATGATGCTATGGTCACTGGCTTCCTGGTTTTCCCT
TCCTCTGATGATCCTGGAATTGGTTTCCAGCGCAAAGCAACTCTTTGA
AA sequence
>Potri.016G093000.1 pacid=42809291 polypeptide=Potri.016G093000.1.p locus=Potri.016G093000 ID=Potri.016G093000.1.v4.1 annot-version=v4.1
MASAMPSTTTTTTLRPLFISQQRPTRFFFVTSGIKFPDKKWIDNKNKNNYYHHKNVSAYPGFPVLTSCSSYSLHSFLSLRSPSLLSHPSLCFLFQSRSPP
LRSPFSYMTTTNQSSPDPPPQSPSTKTVRVVVKGRVQGVFYRNWTVENATQLGLKGWVRNRRDGSVEALFSGDSDKVQEMEQRCRRGPHDAMVTGFLVFP
SSDDPGIGFQRKATL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03370 acylphosphatase family (.1) Potri.016G093000
[exp]
0 1
AT4G25130 PMSR4 peptide met sulfoxide reductas... Potri.012G115800
[exp]
2.23 0.9674
AT4G20030 RNA-binding (RRM/RBD/RNP motif... Potri.003G074900
[exp]
2.82 0.9571
AT3G48070 RING/U-box superfamily protein... Potri.015G069400
[exp]
7.87 0.9399
AT5G06340 ATNUDX27 nudix hydrolase homolog 27 (.1... Potri.016G070900
[exp]
9.74 0.9541
AT2G38270 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting ... Potri.016G119200
[exp]
10.09 0.9575
AT2G20000 CDC27b, HBT HOBBIT, CDC27 family protein ... Potri.017G065600
[exp]
10.24 0.9434
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.007G060400
[exp]
10.29 0.9623
AT5G27280 Zim17-type zinc finger protein... Potri.005G246200
[exp]
10.95 0.9501
AT3G11810 unknown protein Potri.010G163300
[exp]
14.42 0.9185
AT1G53920 GLIP5 GDSL-motif lipase 5 (.1) Potri.018G063901
[exp]
14.49 0.9401

Potri.016G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.