Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03415 372 / 8e-128 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) AT5G02470 241 / 3e-78 E2F_DP DPA Transcription factor DP (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124200 [exp] 527 / 0 AT5G03415 392 / 1e-135 Transcription factor DP (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022620 [exp] 391 / 2e-136 AT5G03415 393 / 6e-137 Transcription factor DP (.1.2) Lus10014423 [exp] 382 / 2e-132 AT5G03415 404 / 1e-140 Transcription factor DP (.1.2) Lus10023926 [exp] 374 / 6e-129 AT5G03415 409 / 2e-142 Transcription factor DP (.1.2) Lus10033151 [exp] 42 / 0.0004 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02319 [poplar] [flax] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [poplar] [flax] PF08781 [poplar] [flax] DP Transcription factor DP
Representative CDS sequence Show only first row Show all	>Potri.016G093200.2 pacid=42809823 polypeptide=Potri.016G093200.2.p locus=Potri.016G093200 ID=Potri.016G093200.2.v4.1 annot-version=v4.1 ATGGTTACTGGTGGGGGCCACCTAGAAGATGGAGACAGGCACCCGTCGTCGGCTGCTACTAGAGGAGGAGGAGGAGGAGGAGCCACCACCGGGTCTTGGG TGTCTGGCCAATCGGTGTCAACTAGTGGCAGTGTGGGGTCTCCATCCAGCCGGAGCGAGCATGCCATGGCCACTCCCGCTAGTGACAACACTTTTTTAAG GTTGAACCATCTCGACATTCACGCCGATGATGCTGCCACTCAAGATGCCGCAGCTAATAAGAAGAAAAAGAGAGGTCAACGGGCAGCTGGTGGAGCCGAT AAGAGTGGTAGAGGACTTCGTCAATTTAGTATGAAAGTTTGTGAAAAGGTGGAATCCAAAGGAACAACCACTTACAATGAGGTAGCAGATGAACTTGTTG CTGAGTTTGCTGACCCTAGTAATAGTGTTTCTACCCCAGATCAGCAACAATATGATGAGAAAAACATACGGCGGAGGGTGTATGATGCTCTGAATGTACT CATGGCATTAGACATTATATCTAAGGATAAAAAGGAAATACAGTGGAAAGGTCTCCCCCGAACTAGCCTCAGTGATATTGAAGAATTAAAGGCTGAGCGT CTTGGATTGAGAAATAGGATTGAAAAGAAAGCTGCCTATTTGCAAGAACTGGAGGAACAATTCATGGGCCTTCAGAACCTGATACAGCGAAATGAACAAC TGTACAGCTCAGGAAATGCTCCTAGTGGTGGTGTGTCATTGCCTTTTATTCTGGTTCAGACACGTCCTCATGCAACTGTTGAAGTGGAGATATCAGAAGA TATGCAGCTCGTTCATTTTGATTTTAATAGCACTCCTTTCGAGCTCCATGATGATAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACACCAGAGT GATAATATGGCTGCACCCAATCCAGCGGCTGATGGAGGTGAAGGTTCTAGCATGTCCATCATGTATCAACCACAAATCCGTACTTCCCCAAGGACAAACA ATCCCGTTAGGCTTCCTACCTCTCCTCCCCTTCCTGGAATAATAAAAGCACGTGTTAAGCATGAGCATTGA
AA sequence Show only first row Show all	>Potri.016G093200.2 pacid=42809823 polypeptide=Potri.016G093200.2.p locus=Potri.016G093200 ID=Potri.016G093200.2.v4.1 annot-version=v4.1 MVTGGGHLEDGDRHPSSAATRGGGGGGATTGSWVSGQSVSTSGSVGSPSSRSEHAMATPASDNTFLRLNHLDIHADDAATQDAAANKKKKRGQRAAGGAD KSGRGLRQFSMKVCEKVESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELKAER LGLRNRIEKKAAYLQELEEQFMGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERHQS DNMAAPNPAADGGEGSSMSIMYQPQIRTSPRTNNPVRLPTSPPLPGIIKARVKHEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.016G093200 [exp]	0	1
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.003G093900 [exp]	5.65	0.6978
AT4G19150			Ankyrin repeat family protein ...		Potri.001G130500 [exp]	7.74	0.6923
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	9.74	0.7036
					Potri.006G276250 [exp]	9.94	0.6936
AT2G14285			Small nuclear ribonucleoprotei...		Potri.006G167000 [exp]	11.22	0.6760
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	12.12	0.7111
					Potri.005G033300 [exp]	14.14	0.7201
AT1G79390			unknown protein		Potri.010G174700 [exp]	15.65	0.6989
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Potri.003G157450 [exp]	21.49	0.6627
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	26.49	0.6483

Compare expression of checked genes

Potri.016G093200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.