Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36930 184 / 2e-60 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124100 [exp] 233 / 5e-81 AT2G36930 184 / 1e-60 zinc finger (C2H2 type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023928 [exp] 191 / 2e-64 AT2G36930 182 / 1e-59 zinc finger (C2H2 type) family protein (.1) Lus10014426 [exp] 187 / 9e-63 AT2G36930 180 / 7e-59 zinc finger (C2H2 type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.016G093500.1 pacid=42810064 polypeptide=Potri.016G093500.1.p locus=Potri.016G093500 ID=Potri.016G093500.1.v4.1 annot-version=v4.1 ATGGGAGGCAAGTGTCCAAGCAGGAAGGTGAAGAAGAGAAGATACTCTCACAAGACGGCGCGGCGCTCAAAATTTCTACTCAAAGGCGACGATGCGGTAT ATGAGGAGCTGCAGCAAAAGCCTGACGGGGAGATGAAGGAGGCAACGTTGCCTCTTGACGAGGATTTACCTGGCATGGGCCAATATTACTGTCTGCACTG CGACCGTTACTTTGCTAATGTGAGTGTGAGGGACGAGCACTTCAAGACCAAACGTCACAAGAAGCGTGTAAAGCAAATGATGGGACCTGCACCGCATACT CAACTTGATGCTGACTTAGCTGCCGGGATGGGTGCCCCAGATAATGGTCTTAAGCTTATGTCTATGTGA
AA sequence Show only first row Show all	>Potri.016G093500.1 pacid=42810064 polypeptide=Potri.016G093500.1.p locus=Potri.016G093500 ID=Potri.016G093500.1.v4.1 annot-version=v4.1 MGGKCPSRKVKKRRYSHKTARRSKFLLKGDDAVYEELQQKPDGEMKEATLPLDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHKKRVKQMMGPAPHT QLDADLAAGMGAPDNGLKLMSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.016G093500 [exp]	0	1
AT5G59460			scarecrow-like transcription f...		Potri.009G033400 [exp]	3.87	0.6518
AT4G27490			3'-5'-exoribonuclease family p...		Potri.009G010600 [exp]	13.19	0.6865
AT2G03820			nonsense-mediated mRNA decay N...		Potri.004G121500 [exp]	13.41	0.6585
AT1G76010			Alba DNA/RNA-binding protein (...		Potri.002G017600 [exp]	15.65	0.6897
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	23.40	0.6922
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	39.06	0.6758
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.002G138300 [exp]	42.00	0.6459
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.001G135800 [exp]	44.09	0.5928
AT4G16830			Hyaluronan / mRNA binding fami...		Potri.014G049300 [exp]	45.95	0.6019
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Potri.018G087900 [exp]	51.23	0.5790

Compare expression of checked genes

Potri.016G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.