Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PGP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36910 2118 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28860 1255 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G28010 1131 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G25960 1118 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1104 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28345 991 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 976 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28360 971 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28380 964 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT2G47000 952 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123900 [exp] 2384 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.017G081100 [exp] 1286 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 1123 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 1120 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 1090 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139700 [exp] 1071 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.014G113500 [exp] 1000 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G074000 [exp] 989 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 983 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023929 [exp] 2160 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 1800 / 0 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10030674 [exp] 1276 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1275 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 1101 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1083 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10005839 [exp] 991 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 991 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 989 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 982 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.016G093600.1 pacid=42809790 polypeptide=Potri.016G093600.1.p locus=Potri.016G093600 ID=Potri.016G093600.1.v4.1 annot-version=v4.1 ATGTCACAAGAGTCTCTAGAGATAAAGACGATTGAACAATGGAAATGGTCAGAAATGCAAGGCCTTGAGCTCGTGTCTGAGCCTCCTCCTGATCCCTCTT CTCAGTCCCACCCCTTTAAAATCACACCAACAACACCAAGTCTAACATTAAACACAAACTCAACGGACCAACTACAACAACAACAACAACAAAGTGTAGT TGAGAGAAGAGAAATGGAAAGTACAGAGCCAAAGAAAGGTGGGACTTCTAGTAGTAGTGGTGGTGGTGGCAATGGAGAGAAGCCGGGTGATGTGGCTGTA GTTGGATTTGGAGAGCTGTTTAGATTTGCTGATGGTTTAGATTATGTGTTGATGGGAATTGGGTCAATGGGTGCATTTGTACACGGATGTTCTTTGCCTC TCTTTCTTCGGTTCTTTGCCGATCTTGTTAACTCTTTTGGCTCTAACGCCAATAACATGGATAAGATGATGCAAGAGGTTTTGAAGTACGCATTTTACTT TCTTATCGTTGGTGCTGCCATTTGGGCATCGTCATGGGCAGAAATATCATGTTGGATGTGGACTGGAGAGAGGCAATCAACAAAGATGAGGATCAAGTAC CTAGAAGCAGCGTTAAACCAGGACATTCAATACTTTGACACCGAGGTTCGGACCTCAGACGTTGTTTCTGCCATTAACACTGATGCAGTGATGGTCCAAG ATGCCATTAGTGAGAAGCTGGGTAATTTTATTCACTATATGGCAACATTTGTTTCTGGATTTGTGGTGGGTTTCACCGCTGTGTGGCAATTGGCACTGGT TACTCTGGCAGTGGTTCCACTCATAGCTGTGATTGGAGCCATCCACACCACCACATTAGCCAAACTCTCTGGCAAGAGCCAAGAAGCTTTATCACAGGCT GGAAACATTGTAGAGCAGACAATAGTCCAAATTCGGGTTGTTTTGGCATTTGTTGGGGAATCAAGAGCATTACAAGCCTACTCGTCGGCTTTGAAGGTCG CTCAAAGGATCGGTTACAAGAGTGGATTTTCTAAGGGAATGGGATTAGGTGCAACTTACTTTGTAGTTTTCTGTTGCTATGCTCTTCTTCTCTGGTATGG AGGTTATCTTGTTAGACATCGTTACACCAATGGAGGTCTAGCCATAGCTACCATGTTTGCAGTCATGATTGGAGGATTAGGTATAGGACAAGCTATCCCT AGCATGGGTGCATTTGCCAAAGCAAAAGTTGCAGCTGCAAAGATTTTCCGAATAATTGATCATAAGCCGGCTATTGATCGAAACAGTGAATCTGGGATAG AATTAGAGGCAGTTACTGGGCTTGTGGAGCTCAATAATGTAGATTTTGCATACCCATCAAGGCCAGACGTTCGAATTCTGAACAATTTTTCACTTAATGT CCCAGCTGGAAAGACCATAGCTTTGGTTGGCAGCAGTGGCTCTGGTAAAAGCACTGTAGTCTCACTCATTGAGAGATTCTATGATCCCAACTCAGGACAA GTACTGCTAGATGGGCATGACATTAAGACTTTAAAGCTGCGATGGTTGAGACAACAGATAGGGCTTGTTAGCCAAGAGCCTGCCTTGTTTGCAACAACCA TCAAAGAAAATATACTACTGGGAAGGCCTGATGCAGATCAAGTTGAGATCGAAGAAGCCGCCAGAGTTGCAAATGCCCATTCATTCATTATCAAGCTACC TGATGGCTTTGACACTCAGGTAGGTGAGAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGAATAGCTATAGCCAGGGCTATGTTGAAAAACCCAGCA ATTTTGCTTTTAGACGAGGCAACAAGTGCTTTGGATTCCGAGTCAGAAAAGCTTGTGCAAGAGGCCCTTGACAGGTTCATGATTGGTAGGACTACTCTTG TCATTGCCCATCGGCTCTCCACCATACGCAAGGCTGACCTTGTCGCTGTACTCCAGCAGGGTAGTGTTAGTGAAATAGGAACTCATGATGAGCTCATTGC TAAAGGAGAAAATGGTGTGTATGCTAAGCTCATCAGAATGCAGGAGATGGCACATGAAACAGCCCTAAACAATGCCAGAAAGAGCAGTGCAAGGCCTTCT AGTGCCAGGAACTCTGTAAGCTCACCAATAATCGCCCGTAATTCCTCATATGGCCGATCACCATACTCACGAAGGCTTTCTGACTTTTCTACCTCTGATT TTAGTCTCTCCCTCGATGCCTCATTCCCCAATTATCGACTTGAAAAGCTTGCTTTCAAGGAGCAAGCTAGTTCCTTCTGGCGCCTTGCAAAGATGAATTC TCCTGAATGGGTCTATGCCTTGGTTGGTTCTATTGGGTCTGTTATTTGTGGTTCCCTTAGCGCCTTCTTTGCATATGTTCTCAGTGCTGTACTCAGCATC TATTATAATCCGAACCATGCTTATATGAGCAGAGAAATTGCAAAATACTGCTATTTGCTAATCGGGCTCTCATCAGCTGCACTGATATTCAATACACTAC AGCATTCCTTTTGGGATATTGTGGGAGAAAACCTTACAAAACGAGTAAGGGAGAAAATGCTGACAGCAGTGCTAAAAAATGAAATGGCATGGTTTGATCA GGAAGAAAATGAGAGTGCTAGGATTGCAGCAAGATTGGCTCTCGATGCAAACAATGTCAGATCAGCCATTGGAGACAGAATTTCAGTGATTGTACAGAAT ACAGCACTCATGCTAGTTGCTTGCACTGCAGGGTTTGTTTTGCAGTGGCGCCTTGCTCTTGTCCTCATCGCTGTCTTCCCTTTGGTTGTTGCAGCCACTG TTCTACAGAAAATGTTCATGAATGGTTTCTCGGGAGACCTAGAGGCTGCCCATTCGAAGGCTACACAACTGGCTGGAGAGGCCATAGCCAATGTGAGGAC TGTTGCTGCCTTCAATTCAGAGGCAAAAATAGTGGGTCTTTTCTCTTCCAATCTTGAAACACCTTTACGGCGTTGCTTTTGGAAGGGACAGATTGCAGGA AGTGGATTTGGGATAGCACAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCATCCTGGCTTGTGAAGCATGGAATCTCTGATTTCTCTA ATACAATTCGAGTTTTTATGGTCCTCATGGTCTCTGCCAATGGTGCAGCTGAAACTTTAACCTTGGCACCTGACTTCATTAAGGGTGGTCGAGCCATGCG CTCAGTCTTCGACCTACTTGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTTCCTGACCGTCTTCGTGGAGAAGTTGAACTAAAG CATGTTGACTTTTCTTATCCCACTCGCCCTGATGTTCCAATTTTCCGTGACCTTAATCTTCGTGCACGTGCTGGGAAAATTCTTGCCCTTGTGGGTCCTA GTGGATGTGGCAAGAGCTCTGTCATTGCTCTCATACAGAGATTCTATGAGCCATCATCCGGGCGTGTGATGATTGATGGAAAGGACATTAGGAAATATAA TCTCAAGTCCCTGAGGAAGCACATTGCAGTAGTCTCTCAAGAGCCGTGCCTCTTTGCTACTACCATTTATGAAAATATTGCTTACGGGAATGAGTCAGCA ACTGAGGCTGAAATTATTGAAGCCGCTACTTTGGCCAATGCTGATAAGTTCATATCTTCATTGCCAGATGGGTACAAAACATTCGTAGGGGAGAGGGGAG TTCAATTATCCGGTGGACAGAAGCAAAGAGTTGCCATTGCCCGGGCTTTAATAAGGAAGGCTGAGCTTATGCTACTTGATGAAGCAACAAGTGCACTAGA TGCAGAATCTGAGAGGTCTGTCCAGGAAGCTCTGGACCGTGCTTGCTCGGGAAAGACCACAATTGTTGTTGCTCATCGGCTATCAACTATAAGGAATGCC CATGTCATTGCTGTAATCGATGATGGTAAAGTAGCAGAGCAAGGATCCCACTCGCATCTATTGAAAAATTATCCTGATGGGTCTTATGCCCGCATGATAC AGTTACAAAGGTTCACACATAGCCAAGTCGTTGGAATGACATCAGGATCAAGTTCCTCAACTAGACCTAAAGATGATGGAGAGAAGGAAGGCTAG
AA sequence Show only first row Show all	>Potri.016G093600.1 pacid=42809790 polypeptide=Potri.016G093600.1.p locus=Potri.016G093600 ID=Potri.016G093600.1.v4.1 annot-version=v4.1 MSQESLEIKTIEQWKWSEMQGLELVSEPPPDPSSQSHPFKITPTTPSLTLNTNSTDQLQQQQQQSVVERREMESTEPKKGGTSSSSGGGGNGEKPGDVAV VGFGELFRFADGLDYVLMGIGSMGAFVHGCSLPLFLRFFADLVNSFGSNANNMDKMMQEVLKYAFYFLIVGAAIWASSWAEISCWMWTGERQSTKMRIKY LEAALNQDIQYFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGAIHTTTLAKLSGKSQEALSQA GNIVEQTIVQIRVVLAFVGESRALQAYSSALKVAQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHRYTNGGLAIATMFAVMIGGLGIGQAIP SMGAFAKAKVAAAKIFRIIDHKPAIDRNSESGIELEAVTGLVELNNVDFAYPSRPDVRILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQ VLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIARAMLKNPA ILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARPS SARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASFPNYRLEKLAFKEQASSFWRLAKMNSPEWVYALVGSIGSVICGSLSAFFAYVLSAVLSI YYNPNHAYMSREIAKYCYLLIGLSSAALIFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQN TALMLVACTAGFVLQWRLALVLIAVFPLVVAATVLQKMFMNGFSGDLEAAHSKATQLAGEAIANVRTVAAFNSEAKIVGLFSSNLETPLRRCFWKGQIAG SGFGIAQFSLYASYALGLWYASWLVKHGISDFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELK HVDFSYPTRPDVPIFRDLNLRARAGKILALVGPSGCGKSSVIALIQRFYEPSSGRVMIDGKDIRKYNLKSLRKHIAVVSQEPCLFATTIYENIAYGNESA TEAEIIEAATLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNA HVIAVIDDGKVAEQGSHSHLLKNYPDGSYARMIQLQRFTHSQVVGMTSGSSSSTRPKDDGEKEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	0	1	PGP1.2
AT2G41820			Leucine-rich repeat protein ki...		Potri.016G055400 [exp]	1.00	0.9336
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	2.23	0.9007	Pt-PGP1.1
AT2G25220			Protein kinase superfamily pro...		Potri.018G022300 [exp]	2.44	0.9086
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	2.82	0.9040
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	3.74	0.9184	ALDH22.1
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.006G076200 [exp]	5.29	0.8931	SLP3.1
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	5.47	0.8765
AT3G08490			unknown protein		Potri.009G061300 [exp]	7.74	0.8813
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	7.93	0.8898
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.011G110700 [exp]	8.00	0.8758	PEPC.2

Compare expression of checked genes

Potri.016G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.