Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07570 540 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 538 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G28930 529 / 0 APK1B protein kinase 1B (.1.2.3) AT2G39660 481 / 5e-170 BIK1 botrytis-induced kinase1 (.1) AT2G02800 461 / 1e-161 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 453 / 3e-159 PBL1 PBS1-like 1 (.1.2) AT1G14370 449 / 5e-157 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G26970 445 / 1e-155 Protein kinase superfamily protein (.1) AT5G15080 445 / 2e-154 Protein kinase superfamily protein (.1) AT3G01300 440 / 1e-152 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031300 [exp] 590 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 584 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G056400 [exp] 549 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 547 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.010G093700 [exp] 476 / 1e-167 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 472 / 3e-166 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.004G129000 [exp] 444 / 1e-154 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 444 / 3e-154 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 443 / 9e-154 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024391 [exp] 623 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 620 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 582 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016537 [exp] 541 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 540 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10000954 [exp] 531 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002697 [exp] 530 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004964 [exp] 526 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 521 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10003972 [exp] 489 / 5e-174 AT5G02290 448 / 5e-158 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G094300.2 pacid=42809077 polypeptide=Potri.016G094300.2.p locus=Potri.016G094300 ID=Potri.016G094300.2.v4.1 annot-version=v4.1 ATGGGACTTTGTTGGAGCAATCGAATCAAGTCTTATACTTGTTCTAATACGGGTTTGAGTTCAAAATGCGGAAGCAGAAATGGGAAAACTTTGAGTAGTT CTAGTAGCAAAGTGTCGATAGTTTCTGTACCCCAAACACCTCGGAGTGAGGGTGAAATCTTGCAGTCTTCGAATTTAAAGATCTTTACCTTCGGTGAGCT GAAGACTGCCACTAGAAATTTCCGACCAGACAGTGTATTAGGAGAAGGTGGTTTTGGGTCAGTTTTTAAAGGGTGGGTTGATGAACACTCACTTGCAGCT ACCAGACCAGGCACCGGTATGGTGATTGCTGTGAAGAGGCTAAACCAAGAAGGGTTCCAGGGTCACAGGGAATGGCTGGCAGAAATCAACTATCTTGGGC AATTCCAACACCCTAATCTTGTTAAGTTGATTGGTTACTGCTTAGAGGATGACCATCGTCTTCTGGTTTATGAATTCATGCCCCGTGGCAGCATGGAAAA CCATTTATTCAGGAGAGGGTCTCACTTCCAGCCACTTTCCTGGAACATTCGAATGAAAGTTGCACTTGGTGCTGCAAGGGGGCTTGCCTTTCTTCACAGT GCTGACGCAAAAGTCATATATCGTGACTTCAAGACGTCTAACATCCTACTTGATTCGAACTACAATGCAAAGCTTTCTGATTTCGGTTTAGCCAGGGATG GACCAACTGGCGATAATAGTCATGTATCTACTAGGGTGATGGGAACCCATGGATATGCAGCACCAGAGTATTTAGCCACAGGTCATTTGACTCCAAAGAG CGATGTATACAGCTTTGGAGTTGTACTTCTGGAAATGTTATCTGGTCGACGGGCTATAGACAAGAACCGGCCATCTGGTCAGCACAACCTGGTGGAATGG GCCAAACCTTACCTGACAAACAAGCGTAGAGTTTTCCGTGTTCTGGATACACGTCTTGAAGGCCAGTATGTACCCAGTCGGGCTCAAAAGCTTTCTAACC TTGCACTTCAATGCTTAGCTGTGGAACCGAAGTTCAGGCCAAATATGGATGAGGTGGTAATGGTGTTAGAGCAGCTTCAAGAACAAGTAAAGGACATACC AAAAATTTCCCATAAAGAGCACAATTTAAAAGTTCGTGGGGGTGCCAATGGTGGACAGATTGCTTATCCCAGGCCTTCGGCATCCCCACTTTATGCATAA
AA sequence Show only first row Show all	>Potri.016G094300.2 pacid=42809077 polypeptide=Potri.016G094300.2.p locus=Potri.016G094300 ID=Potri.016G094300.2.v4.1 annot-version=v4.1 MGLCWSNRIKSYTCSNTGLSSKCGSRNGKTLSSSSSKVSIVSVPQTPRSEGEILQSSNLKIFTFGELKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLAA TRPGTGMVIAVKRLNQEGFQGHREWLAEINYLGQFQHPNLVKLIGYCLEDDHRLLVYEFMPRGSMENHLFRRGSHFQPLSWNIRMKVALGAARGLAFLHS ADAKVIYRDFKTSNILLDSNYNAKLSDFGLARDGPTGDNSHVSTRVMGTHGYAAPEYLATGHLTPKSDVYSFGVVLLEMLSGRRAIDKNRPSGQHNLVEW AKPYLTNKRRVFRVLDTRLEGQYVPSRAQKLSNLALQCLAVEPKFRPNMDEVVMVLEQLQEQVKDIPKISHKEHNLKVRGGANGGQIAYPRPSASPLYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.016G094300 [exp]	0	1
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	12.24	0.5543
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.008G091000 [exp]	16.91	0.6392	Pt-VTI12.1
AT1G19690			NAD(P)-binding Rossmann-fold s...		Potri.002G031500 [exp]	24.97	0.5915
AT4G32272			Nucleotide/sugar transporter f...		Potri.006G255400 [exp]	27.16	0.6158
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	41.59	0.5762
AT2G43780			unknown protein		Potri.019G096700 [exp]	42.70	0.5848
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.014G042700 [exp]	46.74	0.5285
AT5G04270			DHHC-type zinc finger family p...		Potri.010G226100 [exp]	55.50	0.5169
AT5G11030		ALF4	aberrant lateral root formatio...		Potri.006G259600 [exp]	55.50	0.4870
AT5G36930			Disease resistance protein (TI...		Potri.005G004500 [exp]	57.82	0.5169

Compare expression of checked genes

Potri.016G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.