Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03330 316 / 7e-107 Cysteine proteinases superfamily protein (.1.2) AT5G04250 277 / 2e-91 Cysteine proteinases superfamily protein (.1.2) AT3G02070 239 / 1e-78 Cysteine proteinases superfamily protein (.1) AT3G22260 213 / 4e-68 Cysteine proteinases superfamily protein (.1.2.3) AT2G39320 98 / 3e-24 Cysteine proteinases superfamily protein (.1) AT5G67170 61 / 5e-10 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 49 / 3e-06 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125900 [exp] 575 / 0 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 302 / 4e-101 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 289 / 8e-96 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.016G019700 [exp] 238 / 6e-78 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G021700 [exp] 235 / 8e-77 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 235 / 9e-77 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.008G036900 [exp] 223 / 1e-72 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.005G140500 [exp] 64 / 4e-11 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.004G196800 [exp] 47 / 1e-05 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001404 [exp] 390 / 6e-136 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 382 / 7e-133 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 342 / 5e-117 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 338 / 2e-115 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10038708 [exp] 286 / 1e-94 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 282 / 4e-93 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 273 / 2e-90 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 223 / 5e-72 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 211 / 2e-66 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 190 / 4e-59 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02338 [poplar] [flax] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Potri.016G094700.4 pacid=42809721 polypeptide=Potri.016G094700.4.p locus=Potri.016G094700 ID=Potri.016G094700.4.v4.1 annot-version=v4.1 ATGGTTATTTACGAGCAAGATTCGGATGTTATTCAATGGGGTCTTCGTCTTCTTGATGGAGACCCACCCTATTATTCTGGGTACTATGGTGATGCCATCA TACAGAGTGATGATGGATATCATGGACATTATGTGCGGGATCATTATGATATTTCGGATTGCAGCCATGTAGAGAGCGATGAGATGATTGCGCGCACCTT GCAAGAAGAGTTTTCGCAGCTTGCCGTTACTGAAGCTACTGAATATTCACATGGTGGAGAAGAACATTTACACACTTCCGTTGATGAGCATCCTTGGCAA TGTACACCCACTAGGAACTACTGTTCAGACAATGAATGTAGTCATGAAGAATCAGATGATGCAGTACCCTCTAGTTCATGCTCAAGTCCTGCTAATGGAG AAGAGTATTCCTACTCACCAGAATCTAATGATGATTATGAGCTGGATGATGAAGTAGGCAAGAGGTTGAATCAGTTGATCCCAATCCGTCATGTTCCTAG AATTAATGGAGAAATACCGTCAATTGATGAAGCAACCTCGGATCATGAAAGGCTTCTGAACAGACTGCAGTTATTTGGCTTTGATGAACTTAAGGTTCAA GGAGATGGAAACTGTCAGTTCCGTGCTTTATCCGATCAAATATATAATACACCTGATCGCCACAAAACTGTAAGACGACAGGTTGTGTATCAGCTTAATT CTCACCCAGAGATATATGAGGGATATGTTCCCATGGAGTATGGTGAATATTTGAGGAAAATGTCAAGGAGTGGTGAGTGGGGTGATCATGTGACATTGCA AGCAGCCGCGGATTCGTATGGTGTGAAAATACTCGTTATGACTTCTTTCAAGGACACATGTTACATAGAGATTCTTCCTGTCAGCCAAAAGCCAAAAGGA GTCATTTTCTTGAGCTTTTGGGCTGAGGTACATTACAACTCCATCTATTTTCAAGGAGATACATCTAGTGAATTCAGAAAGAAGAAGAGGTGGTGGAGTT TCGGGAATAAGCACTAG
AA sequence Show only first row Show all	>Potri.016G094700.4 pacid=42809721 polypeptide=Potri.016G094700.4.p locus=Potri.016G094700 ID=Potri.016G094700.4.v4.1 annot-version=v4.1 MVIYEQDSDVIQWGLRLLDGDPPYYSGYYGDAIIQSDDGYHGHYVRDHYDISDCSHVESDEMIARTLQEEFSQLAVTEATEYSHGGEEHLHTSVDEHPWQ CTPTRNYCSDNECSHEESDDAVPSSSCSSPANGEEYSYSPESNDDYELDDEVGKRLNQLIPIRHVPRINGEIPSIDEATSDHERLLNRLQLFGFDELKVQ GDGNCQFRALSDQIYNTPDRHKTVRRQVVYQLNSHPEIYEGYVPMEYGEYLRKMSRSGEWGDHVTLQAAADSYGVKILVMTSFKDTCYIEILPVSQKPKG VIFLSFWAEVHYNSIYFQGDTSSEFRKKKRWWSFGNKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03330			Cysteine proteinases superfami...		Potri.016G094700 [exp]	0	1
AT3G54190			Transducin/WD40 repeat-like su...		Potri.006G113000 [exp]	1.41	0.8492
AT5G40740			unknown protein		Potri.001G337600 [exp]	6.92	0.7957
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Potri.013G017500 [exp]	12.00	0.8260
AT5G40270			HD domain-containing metal-dep...		Potri.009G147800 [exp]	12.72	0.8569
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	18.00	0.8424
AT5G27830			unknown protein		Potri.005G024200 [exp]	18.70	0.8386
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	22.62	0.7884
AT1G61900			unknown protein		Potri.004G016000 [exp]	24.24	0.8220
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	32.21	0.8373
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	35.24	0.8309

Compare expression of checked genes

Potri.016G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.