Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02390 189 / 8e-50 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G07620 82 / 6e-16 ATOBGM GTP-binding protein Obg/CgtA (.1) AT2G45900 53 / 1e-06 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G61380 49 / 1e-05 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G00440 48 / 4e-05 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239500 [exp] 273 / 6e-79 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 253 / 1e-71 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.002G160000 [exp] 94 / 2e-19 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.014G084600 [exp] 83 / 6e-16 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.005G101700 [exp] 47 / 9e-05 AT2G17550 525 / 2e-174 unknown protein Potri.002G253600 [exp] 45 / 0.0003 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G103400 [exp] 45 / 0.0003 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016715 [exp] 167 / 1e-42 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10036009 [exp] 133 / 1e-31 AT5G02390 196 / 9e-53 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10040814 [exp] 127 / 5e-30 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10042850 [exp] 69 / 2e-11 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 68 / 2e-11 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10036356 [exp] 59 / 1e-08 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10014776 [exp] 59 / 2e-08 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10017797 [exp] 53 / 1e-06 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10018833 [exp] 51 / 4e-06 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10002008 [exp] 44 / 0.001 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.016G095500.3 pacid=42808974 polypeptide=Potri.016G095500.3.p locus=Potri.016G095500 ID=Potri.016G095500.3.v4.1 annot-version=v4.1 ATGGGAAAGAACTTGGAGCACCATTCTTCAAGTGTTTCTATTGAGAATAATCATCCAGGATGCATGTGGAGCATACTTCATGTACTCAAGTACCATCATT GGCGATATATTAAGAAAAAGCTTCACCACAAGAGTGGTGGTAACAGGAAACATGCCAAGTGGGATGGAAATCCAGGAAATATTTTAACTGATTCTAAGGT TGGTGGAACCCCTCAGAGCAACAACACTGGAAATCACCATTCAACAGTTATTGATAAGAAGACACAATTCACTTCAGCCACCAAAGCTTCTGTCAAATCT CGAATAAAATCTAGAATTTCTGATGAGCTTTCCAAAAGGAAGGGCCGACATTGCCGAAGCTCAACTTACCCTATAAGATCACCCATGATGCAAACTGATT CCTTTCGCCATACAGAACTGTCAGATGAGGATCTCGTTTCTGATATAAGATTAAGTGATGGGTGTCTCACAATTGCTGAAGAACCAACCTCTTCCACCAC CAAATTACTGGATCCATCGGTACCAACATCCTTGGAGGATTACAATCGTGAAGATTGTGGCCCCATGCTCACTAGTAATCACCTTGGACATAACCAGGTT GATATGACTGAAAAGGAACTAATTGAGAATCACTCTCTTCTTCAGGAAAATTCAAATGATAAAAGGCAGAAATCAGTACATGTAAAGGGTCTCAGCACGG ATGCTTCAGCCCAACAATCAAAAGAGATTTTGGATGCACTAGATATGATCAACATAGACAAGGATATTTTAAAAATCTTTTTACAAGATTTGACGAATCC TTTGGCTCATTACATGCACCATCACTATACATTCACCACTAAAATGGGATATTCTGTCTCATTTCCTTTACCGGGTTCATCATATGGAATAGGTTCTGGA GCAAGAACAGGCAAGCAGAAGCAGGAGGGCCTGGAGAAGTTGCAAGCAGGTAGCCATACACAAAAGTCTGTTGAGCCCAAGTATAGAGAATATATACGTT CAAAGTCAATGCCATCAATAGCTGCTGCAAATTCCGCTTTGGGTTCATCCCACCGAATTAAGAATCATGCCCAGAATCAAGTGGTTGTTAAGCATTTCAA GAATCTCAAGCAAAAAATAAGGCATGCTATTAAAGAGAGCAAAAATGAGAAACATAGAATAACCATGGATGCAATCCTTCACAAGATTCCTCATGGCCAC AGGTTTTCCAAGAACTTGGAAAGGATTGGTGTTGATAATATGATGGATCATTTCATGAGTAGAGATGGTAAAGACAGTCCCAAAAGTAGCTATGATTATG ATCACTCTCTTCCTTCTACCAGCAATAGTGAATTATACTGCATCAGCAGAACAGTATCATTCAGCGAATCACTGGACAGATATTGCCAGTTGTATGATTC TAGCTTTAACAAAGAAGCAAAACAACATTTCCCTGAGACATTAAAGATGAAAGCAGAAGATGGGGTTTCATTTCAAATGGGCGCCGCAAAATCCATGAGA AGGATTTTTTCCTTGCCAGACCTCAAATCTTTTCCCTATTGCTGTGAGGATTCTTCTGGTTCCTTCCCAGTAAGTCAAGTTAGAACCATGACGGATGACA CTTTGAGCACAAGAGGTAATTTCTGTGAACAAAACAGTCTCAGTCATCCTACAGCTTCCGAGCAATTCTTGGGAGTAGACACTAAAAATCATGTAAGAGG GAATAATGTGGAGAGTGAATCAGATTCAGTTATTGGTGATGAATTGGGTACGATATTGGTTTCAAATGTTGAGACACATGCCAACTGCACTTTAGTTAGT GATGACTTGAGCAACTTGATGACAGTGGATAAGCAGGATATTCTTTCCCCAACTGAAACTATTACTGAAGTGGTAGAACTGACTACTCTGCCTGTGCCTG ACTCTAAACTTCAGGATGAGACAACCAGGCATGCAAACATTTTTGTTGCAGAAGATCTTAATTATTCGAAGAACAATCTAGCAGAATGCAGCATGGATAC ACTTACAATGACAGTGACCGAGGTTGGAATTGAGAAAATAGATTTTTTAAGCAACATCTTGAATAATGATAGTCATCCATTCCAAGTTGATGCCAAAGAC AAAGCCGAATTTGATTATGTCAAGGACGTACTGACGTTGTCTGGTTTCACTGGGAATGAGTTGCTTGGAACATGGAATTCTGATGACCAACCAGTACATC ATTCCATTTTTGAAGAAGCAGAAGGTTGTATGCTCCTAGATCCTGAGTGCTGTGGAAATGAAGGTGGCAACTGTCATCACCTGCTATTGTTTGATCTAAT CAATGAGGTACTAATGGAGATTTATGCAAACTCGTACACTTATTATCCAGTGCCGTTGTCTTCTCTTTCGCATGTCCGTCCAATGCCTGTAGGACGCCAC GTCCTAGAGGAGGTCTGGACAAATATAAGCTGGTATTTAAGCTCAACTACTGAGGGTGACCACTCATTAGATCATGCTTTAAGTAGAGATTTAGCGAAGC GTGATGGTTGGATGAATCTGCAATATGATACAGAATGTGCGGGGCTTGAATTGGAGGACTTGATTTTTGAAGATCTTTTGGAGGAAATTCTTTGCGCTTG A
AA sequence Show only first row Show all	>Potri.016G095500.3 pacid=42808974 polypeptide=Potri.016G095500.3.p locus=Potri.016G095500 ID=Potri.016G095500.3.v4.1 annot-version=v4.1 MGKNLEHHSSSVSIENNHPGCMWSILHVLKYHHWRYIKKKLHHKSGGNRKHAKWDGNPGNILTDSKVGGTPQSNNTGNHHSTVIDKKTQFTSATKASVKS RIKSRISDELSKRKGRHCRSSTYPIRSPMMQTDSFRHTELSDEDLVSDIRLSDGCLTIAEEPTSSTTKLLDPSVPTSLEDYNREDCGPMLTSNHLGHNQV DMTEKELIENHSLLQENSNDKRQKSVHVKGLSTDASAQQSKEILDALDMINIDKDILKIFLQDLTNPLAHYMHHHYTFTTKMGYSVSFPLPGSSYGIGSG ARTGKQKQEGLEKLQAGSHTQKSVEPKYREYIRSKSMPSIAAANSALGSSHRIKNHAQNQVVVKHFKNLKQKIRHAIKESKNEKHRITMDAILHKIPHGH RFSKNLERIGVDNMMDHFMSRDGKDSPKSSYDYDHSLPSTSNSELYCISRTVSFSESLDRYCQLYDSSFNKEAKQHFPETLKMKAEDGVSFQMGAAKSMR RIFSLPDLKSFPYCCEDSSGSFPVSQVRTMTDDTLSTRGNFCEQNSLSHPTASEQFLGVDTKNHVRGNNVESESDSVIGDELGTILVSNVETHANCTLVS DDLSNLMTVDKQDILSPTETITEVVELTTLPVPDSKLQDETTRHANIFVAEDLNYSKNNLAECSMDTLTMTVTEVGIEKIDFLSNILNNDSHPFQVDAKD KAEFDYVKDVLTLSGFTGNELLGTWNSDDQPVHHSIFEEAEGCMLLDPECCGNEGGNCHHLLLFDLINEVLMEIYANSYTYYPVPLSSLSHVRPMPVGRH VLEEVWTNISWYLSSTTEGDHSLDHALSRDLAKRDGWMNLQYDTECAGLELEDLIFEDLLEEILCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.016G095500 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.003G145300 [exp]	1.00	0.9721	WNK8.3
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.016G014600 [exp]	2.00	0.9535
AT1G27461			unknown protein		Potri.002G117700 [exp]	2.23	0.9476
AT1G21280			unknown protein		Potri.004G127101 [exp]	3.16	0.9394
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	3.31	0.9386
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.003G131925 [exp]	5.29	0.9409
					Potri.004G013800 [exp]	5.47	0.9475
AT5G40270			HD domain-containing metal-dep...		Potri.009G147750 [exp]	7.68	0.9096
AT2G23790			Protein of unknown function (D...		Potri.007G031400 [exp]	7.74	0.9162
AT4G10150			RING/U-box superfamily protein...		Potri.013G095100 [exp]	12.48	0.8764

Compare expression of checked genes

Potri.016G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.