Plant FIBer expression Database

Potri.016G095900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03770 538 / 0 AtKdtA, KDTA KDO transferase A (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033622
[exp]
572 / 0 AT5G03770 488 / 7e-172 KDO transferase A (.1)
Lus10017662
[exp]
224 / 8e-70 AT5G03770 186 / 2e-55 KDO transferase A (.1)
Lus10017663
[exp]
134 / 2e-38 AT5G03770 115 / 8e-32 KDO transferase A (.1)
Lus10017664
[exp]
101 / 4e-26 AT5G03770 90 / 1e-22 KDO transferase A (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF04413 Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
Representative CDS sequence
>Potri.016G095900.7 pacid=42808987 polypeptide=Potri.016G095900.7.p locus=Potri.016G095900 ID=Potri.016G095900.7.v4.1 annot-version=v4.1
ATGGGTGTGGTAGCAAGAAAAGGTATGCTAGTGTACAAGATTTACAGGGCGTTAAGCTACGTTGTATCACCGCTACTGCAACTTCACCTACGTTGGCGAA
AGATCCGAGGTCTCGAGCACCCAACCCGTTTGCCTGAGCGTTTGGGACGGCCTTCCCTGACTCGACCTCCTGGCCCGCTCCTTTGGTTCCACGCTGTTTC
TTTAGGTGAAGGAATGGCTGCGATTCCGGTGATTAAAGAATGCGTTAAGTGGAGGCCTGATTTGAACATTTTGTTGACAACAACCACCATGTCTGCTTTT
GAAGTTATAATTAATCAGCTTCCAACCGGTGTCCTACATCAGTTTTCTCCAATCGATACCCCTGCTGCCATGGATGCTTTCCTGGACTATTGGAACCCAA
ATGCAATCATGTTACTAGAGAGTGAACTATGGCCAAATCTTATCATGGCTTCTTCGAGAAAGGGTATTCTACTGGCCTTATTAAATGCTCGAGTTTCTAT
GAAATCCTTCAAATTATGGTCGTCTCCTGTGCTTTTTCCACTCATTTCGTTATTGCTTTCCAAGTTCTCCTTGATTATCCCACTGAGTTCTATGCAGGCA
ATCCATTTCCAGCTTTTGCAGGCCCCACCTTTTATCATCAACTTTGCTGGTGACTTGAAATATGTGGTAGAATATGATGCTTCTAAGGAAGAGTTCAGAA
GCATTGATGATCTGAAGGTACAGCTTGGGCACAGGAAAGTTTGGATGGCTTCTTCCATTCATAGGGGAGAAGAAGAAGTTATGCTAGGAGTTCACAAAGT
GCTCAAGCAAGTGTATCCTGATCTGGTCACTATTATTGTACCTCGTTATCCACAACATGGAAAAGATATAGCACAAAAATTGCAGAAAGAAGGGCAGCAT
GTTGCTTTGAGGTCTCAACATCAAAGGATCGTACCAGGAAGAAACATATATGTGGTGGACACATTAGGTGAGTTGAGACACTTGTATAGGCTAACTCCAA
TAGCTGTCATAGGAGGTTCCTTCTTCCCGGGATTAGCTGGCCATAACATATCAGAAGCTGCAGCAGCTGGCTGTGCTGTTTTGACCGGTTATCATGTTGG
GCATTTCTCACATATGTTACGGGAAATGCAACGATTAAATCCCTTATCAGTTCTGCAGGTAGCTGGAAAATTAGAGCTTGAAGAAGCTATTTTGAAGTTC
TTTAGTGATGGCAAAGTGCTAGAAGCACGACAAACAGCTTCAAAGCAAGCATTTCATGCTCTGTCTAATGGTATCATCGCCAATGCCTGGAACGTGCTAT
ATTTTCATGTTCTAAAACAGGCTTTGCTAAAAGAAACAGATAACAGGTAG
AA sequence
>Potri.016G095900.7 pacid=42808987 polypeptide=Potri.016G095900.7.p locus=Potri.016G095900 ID=Potri.016G095900.7.v4.1 annot-version=v4.1
MGVVARKGMLVYKIYRALSYVVSPLLQLHLRWRKIRGLEHPTRLPERLGRPSLTRPPGPLLWFHAVSLGEGMAAIPVIKECVKWRPDLNILLTTTTMSAF
EVIINQLPTGVLHQFSPIDTPAAMDAFLDYWNPNAIMLLESELWPNLIMASSRKGILLALLNARVSMKSFKLWSSPVLFPLISLLLSKFSLIIPLSSMQA
IHFQLLQAPPFIINFAGDLKYVVEYDASKEEFRSIDDLKVQLGHRKVWMASSIHRGEEEVMLGVHKVLKQVYPDLVTIIVPRYPQHGKDIAQKLQKEGQH
VALRSQHQRIVPGRNIYVVDTLGELRHLYRLTPIAVIGGSFFPGLAGHNISEAAAAGCAVLTGYHVGHFSHMLREMQRLNPLSVLQVAGKLELEEAILKF
FSDGKVLEARQTASKQAFHALSNGIIANAWNVLYFHVLKQALLKETDNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03770 AtKdtA, KDTA KDO transferase A (.1) Potri.016G095900
[exp]
0 1
AT5G06810 Mitochondrial transcription te... Potri.016G048300
[exp]
2.00 0.8214
AT4G19150 Ankyrin repeat family protein ... Potri.003G103400
[exp]
11.66 0.7339
AT5G10320 unknown protein Potri.005G073600
[exp]
14.89 0.7130
AT1G29900 VEN3, CARB VENOSA 3, carbamoyl phosphate ... Potri.008G216501
[exp]
15.58 0.6852
AT3G21215 RNA-binding (RRM/RBD/RNP motif... Potri.010G249700
[exp]
16.43 0.7469
AT4G39952 Pentatricopeptide repeat (PPR)... Potri.005G074000
[exp]
16.88 0.7850
AT1G31430 Pentatricopeptide repeat (PPR-... Potri.003G088600
[exp]
16.97 0.7868
Potri.013G037900
[exp]
16.97 0.7639
AT3G55200 AtSAP130a Arabidopsis thaliana spliceoso... Potri.008G048900
[exp]
17.74 0.7397
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G149800
[exp]
18.54 0.7842

Potri.016G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.