Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03800 993 / 0 EMB166, EMB175, EMB1899 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 484 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 481 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 458 / 2e-148 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G57430 460 / 4e-148 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 459 / 4e-148 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 453 / 1e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 450 / 2e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 456 / 4e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 449 / 1e-144 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 529 / 7e-174 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 506 / 6e-166 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 495 / 1e-162 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 494 / 9e-162 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 489 / 2e-159 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 488 / 2e-156 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 479 / 4e-156 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 471 / 4e-154 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G215500 [exp] 477 / 9e-154 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008637 [exp] 1036 / 0 AT5G03800 902 / 0.0 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035587 [exp] 721 / 0 AT5G03800 630 / 0.0 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 517 / 5e-169 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 507 / 3e-165 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 478 / 9e-155 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 468 / 4e-151 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 466 / 5e-151 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 465 / 1e-150 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 476 / 5e-149 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 461 / 2e-148 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G096400.1 pacid=42809841 polypeptide=Potri.016G096400.1.p locus=Potri.016G096400 ID=Potri.016G096400.1.v4.1 annot-version=v4.1 ATGGCTTCCATTTCTCAAACCCCCGTTACCACCGCTATCACCCTATATCCCTTATGTCTTCCATCTCAAAACTCCTTTTACTTCCCTTCAAAACCACCAC CAACCACCAGCCAACCACCGCCTCAACCACTTACTTCACACATTCTCTCTAAACCCAATCACCTCCACCGCTGTCATTTCTCCTCCTGCACCTCTCAATT CCTCCTATCCTCACCCCTTTCTCTCACTAAACCCCAAAATCTTGAATCCTCTTTCCCTTTAGACTCTAATTATCATTCTCCTCAGACCAACACTGACTGT CTCATTGAAGTTGACGATTTATTCAATTTGCTTCGCTTGTCGGTCAAGTACACTGACATTGATCTTGCAAGAGCTTTACATGCTTCCATTCTCAAACTTG GAGAGGATACCCATCTGGGCAATGCTGTCATAGCAGCTTATATCAAGTTGGGTCTTGTTGTTGATGCTTATGAGGTTTTTATGGGAATGTCTACTCCCGA TGTGGTGTCTTACAGTGCTTTAATTTCGAGTTTTTCTAAGTTGAATCGAGAAACTGAAGCCATCCAACTTTTCTTTAGAATGAGGATTTCAGGTATTGAG CCTAATGAGTACAGTTTTGTTGCTATTTTAACTGCCTGTATTCGGAGTTTGGAATTGGAAATGGGTTTGCAAGTTCATGCTTTGGCAATCAAGTTGGGTT ATTCACAACTTGTTTTTGTTGCCAATGCCTTGATCGGTTTGTATGGAAAGTGTGGTTGTTTGGACCACGCGATTCATTTGTTTGATGAAATGCCTCAAAG AGATATTGCGTCATGGAATACCATGATTTCGAGTTTGGTGAAAGGTTTATCATATGAAAAAGCCTTAGAACTGTTTCGTGTCTTGAATCAAAATAAGGGG TTTAAAGCTGATCAATTCACGCTTTCGACTCTTTTGACTGCTTGTGCTAGGTGCCATGCTAGGATACAAGGCAGAGAGATTCATGCTTATGCCATTAGAA TTGGATTAGAGAACAATTTGAGCGTGAGCAATGCCATTATCGGGTTCTACACTAGGTGTGGAAGTCTGAACCATGTAGCGGCTCTGTTTGAGAGGATGCC AGTCAGAGATATAATTACTTGGACTGAGATGATCACAGCATATATGGAATTTGGGTTGGTGGATTTGGCTGTAGACATGTTTAACAAGATGCCCGAAAAG AATTCTGTGTCTTATAATGCACTTTTGACAGGATTTTGCAAAAATAATGAAGGGTTGAAGGCACTCAATTTATTTGTTAGAATGGTCCAAGAAGGAGCAG AGTTAACAGATTTCACATTGACTGGTGTCATTAATGCTTGCGGATTGCTTTTGAAATTGGAAATCAGTAGGCAAATTCATGGGTTTATCATCAAGTTTGG TTTCAGGTCAAATGCTTGTATTGAAGCAGCCCTGATTGATATGTGCTCAAAGTGTGGAAGGATGGATGATGCTGATAGGATGTTTCAAAGTTTGTCAACT GATGGGGGTAACTCAATAATCCAAACATCAATGATATGTGGCTATGCTCGAAATGGGCTGCCAGAGGAGGCAATTTGTCTTTTCTACCGTTGCCAGTCAG AGGGGACAATGGTTCTAGATGAAGTTGCATTCACTTCAATACTTGGCGTCTGTGGAACTTTAGGATTCCATGAGGTGGGGAAGCAAATCCACTGTCAAGC TTTAAAAACTGGGTTTCATGCTGAATTAGGGGTTGGAAATTCCATAATTAGCATGTATTCCAAGTGTTACAACATAGATGATGCAATTAAGGCTTTCAAT ACTATGCCGGGACACGATGTAGTTTCGTGGAATGGTTTGATTGCAGGCCAACTTCTTCACCGGCAGGGCGATGAGGCCTTGGCTATCTGGTCTAGTATGG AGAAGGCAGGCATAAAGCCGGATGCAATCACTTTTGTTTTGATTGTTTCAGCTTATAAATTCACCAGCTCAAATTTACTGGATGAGTGTCGCAGTTTGTT TCTCTCAATGAAAATGATTCATGATCTGGAACCCACTTCAGAGCATTACGCCTCCTTAGTTGGTGTCTTGGGGTACTGGGGTCTCCTTGAAGAAGCAGAG GAGTTGATCAATAAGATGCCTTTTGACCCTGAGGTTTCTGTTTGGCGAGCTTTGCTTGACGGTTGCAGGCTCCATGCAAACACAAGCATTGGAAAGCGTG TTGCAAAGCACATAATTGGGATGGAGCCTCGGGATCCTTCCACATATGTGCTTGTATCAAATCTATATGCTGCTTCTGGGAGGTGGCATTGCTCAGAAAT GGTCAGGGAGAATATGAGGGATAGGGGGCTTCGAAAGCACCCATGTCGAAGTTGGGTTATAATTAAGAAGCAGCTTCATACATTCTATGCAAGAGATAAA TCCCATCCCCAATCAAAAGACATCTATAGTGGATTAGATATACTAATCTTGAAATGCCTGAAAGCTGGATATGAGCCAGACATGAGCTTTGTTCTTCAGG AAGTCGAGGAGCAGCAAAAGAAGGATTTCTTGTTCTATCACAGTGCAAAACTAGCTGCAACCTATGGACTTCTGAAGACCAGACCTGGAGAACCCATTCG GGTTGTGAAGAACATCCTTCTATGTAGGGATTGCCATACATTCTTGAAATATGCAACAGTAGTCACCCAGAGGGAGATAATTTTTCGGGATGCTTCTGGG TTTCATTGTTTTTCTAATGGTCAATGTTCGTGCAAAGGTTATTGGTGA
AA sequence Show only first row Show all	>Potri.016G096400.1 pacid=42809841 polypeptide=Potri.016G096400.1.p locus=Potri.016G096400 ID=Potri.016G096400.1.v4.1 annot-version=v4.1 MASISQTPVTTAITLYPLCLPSQNSFYFPSKPPPTTSQPPPQPLTSHILSKPNHLHRCHFSSCTSQFLLSSPLSLTKPQNLESSFPLDSNYHSPQTNTDC LIEVDDLFNLLRLSVKYTDIDLARALHASILKLGEDTHLGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIE PNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKG FKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEK NSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLST DGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFN TMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAE ELINKMPFDPEVSVWRALLDGCRLHANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASGRWHCSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFYARDK SHPQSKDIYSGLDILILKCLKAGYEPDMSFVLQEVEEQQKKDFLFYHSAKLAATYGLLKTRPGEPIRVVKNILLCRDCHTFLKYATVVTQREIIFRDASG FHCFSNGQCSCKGYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	0	1
AT4G12640			RNA recognition motif (RRM)-co...		Potri.014G171900 [exp]	1.73	0.8942
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232600 [exp]	2.82	0.8796
					Potri.004G206650 [exp]	4.24	0.8329
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	6.24	0.8742
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	6.48	0.8503
AT1G77290			Glutathione S-transferase fami...		Potri.005G182000 [exp]	8.36	0.8547
AT5G64270			splicing factor, putative (.1)		Potri.017G050800 [exp]	8.36	0.8404
AT4G21720			unknown protein		Potri.004G041700 [exp]	9.53	0.8250
AT5G48340			unknown protein		Potri.014G174300 [exp]	9.79	0.8167
					Potri.011G062950 [exp]	10.39	0.8646

Compare expression of checked genes

Potri.016G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.