Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53090 1447 / 0 UPL7 ubiquitin-protein ligase 7 (.1.2) AT3G17205 348 / 1e-102 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT1G70320 214 / 4e-56 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 210 / 9e-55 UPL1 ubiquitin-protein ligase 1 (.1.2) AT4G12570 131 / 9e-31 UPL5 ubiquitin protein ligase 5 (.1) AT4G38600 103 / 5e-22 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT5G02880 103 / 6e-22 UPL4 ubiquitin-protein ligase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G150000 [exp] 344 / 4e-101 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 337 / 1e-98 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.002G110500 [exp] 219 / 1e-57 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 218 / 3e-57 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 213 / 1e-55 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.006G011701 [exp] 140 / 1e-33 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 135 / 4e-32 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G085200 [exp] 114 / 2e-25 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 106 / 6e-23 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035589 [exp] 1580 / 0 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 1448 / 0 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10017098 [exp] 257 / 8e-71 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10032830 [exp] 214 / 5e-56 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 214 / 9e-56 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 207 / 7e-54 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10037820 [exp] 151 / 8e-37 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10010493 [exp] 136 / 3e-32 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10019908 [exp] 114 / 2e-25 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027324 [exp] 103 / 4e-23 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.016G096500.8 pacid=42809781 polypeptide=Potri.016G096500.8.p locus=Potri.016G096500 ID=Potri.016G096500.8.v4.1 annot-version=v4.1 ATGGACGAAACACCATCTCGCAAGCATCAGGTATCTTTAAGAGGAGCAAGTGCAAGGGAGATTTCAAGGGACGCGCTTCTCCAGAAAGTCTCTCACGAAA GAGAGCTACGCAATTATGCTAGACGCGCTACTGCTTCTGCTATCTTTATTCAGAGGGTTTGGAGACGCTTCATTGTAACAAAGAAAGTAGCAGCCGAGCT TCAATTAGAATGGGAAGCAGAAGCAGCGTTGGTGAAGAATGATTTAACCATAATGGGTGGTAGCTGGATTTCCACTCGCGTTTTGAGACCTTTCCTTTTC TTTGTTCACTGTTTATCGACTCGGCATCACAAGATTCGCGATGCAGATATACCCTGCCTCCACACGTGCTTCAAGCTTCTTCTTGAAAGCATCAATTCTA CTGATTTAGGCAACAACTTTTGCGCCCTGGCGCTGGGTACACCAGAAGAGAGAAGAACGTGGACTTACCAATCTCAGAAGCTCGTTTCTCTTTGCTCAAT TATCCTTGCTAATTGTGACAAATCTCATCAACGGGCTCAAGATATCATGGTTCTTACCTCTCTTGCGATGCGTCTTCTTGTTGTCTTAACTGATCAGAAG TGTTGGAAAAGCATTACCAACAATAGTCCCAAGGATGCAGATGTAGCATGGAAGGATTTGGTCAGGTTTATGGCAAGACCTAAAAGTGGCTTGTACTTAT CCATTAGACGATACATTAACAATTTGGATATTCATTTTTGTCCACAAACAAGCACACTGGCACAGACAGATGATAGATTCTTGATCACTGCAAGTGCAAT AACTTTAGCTCTAAGGCCTTTTAACGTGACAAATTTTGATTTTATTGGCCCTGACGTGGTGGACATCAATTCTGCCCCTGCACAGTACTATTTGTTTCTA CTCACAATTCCCTGGCTCACTCAACGTCTGCCAGCTGTTCTTCTACCCGCTCTGAAGCACAAGTCTATTCTCTCACCATGTTTCCAGACTCTACTGATAT TGAGAGATAATATTTTAAAGGAGATGTCAGAGATGGATCAATTGAAAATCCTGCATTCTTCCAAAGCAATTCCGCCAGTTGCTTGGGCTCTTGCAAACAC CATTTGCCTAGTCACAGGGGATGAGAATGATTATGTGGAACCTGGAGGCCTCAATCAAGGACTGGACTATGCAGTCTATGTCCATGTTGTGATCATTCTT GCTGAAAACTTGTTGTCATGGCTTGATGGTGGTGGAGGGACTGAAAAGGAGAACCAATATGCTCAGGTCATTGCAGAAACATCTGCTGAGCCCTTCGGTA AAGCTTTGTGCGAGATTGAAACAACATGTGCCTTAAAGATGACATATGTGAGCTTACTCAGACCTGTTTGTCAGCAGTGGCATCTTACAAAACTTTTGGC AATGTCAAAGATGGATGCCAATAGTAATGGGGATGAGACTTTGCCCACAAAAACTCTGAAATACTCAGGAAAGTTGAACCTTCTTGGTATTGCATATTTC TATTCTTGCATGCTCCGAATATTTGCAATCTTGAATCCTACAGTTGGGTCATTGCCTGTTCTCAATATGCTGTCATTTACTCCCGGGTTTCCTGTTACCC TATGGGAAGTATTGGAAAATTTACTTTTTCCTGGACATGGAGGCATTTCTGTGGTTAATGATTTTCACACAAGGAAAGTTTCAGCAAACAAAAATGATGG GTTTCTCAAGAAACAACAAAAACAACCCAGTAAGGATGGAGGTAATAAGTTGGTCAACGTACTCCATAAACTTACAGGAAAGTCACAAGCAGGGGTAGAT CATGGAGATTCAGTTAATGGGAATCCTAGTGCACAGGTTGGTGATGATTTGCATGATGCTTGGGATGTAGAACTGTTAAGGTGTGGTCCACAAAAGATTT CAAGAGAAATGTCATGTCTTCTTCATTTGTTCTGTGGGACCTACTCACACCTGCTGTTAGTTCTTGATGACATAGAGTTCTATGAAAAACAGGTTCCATT TATGTTGGAGCAACAACAAAGAATTGCATCAGTGCTCAATACCTTAGCATACAATGGCTTGGCCCATAGTATAAGTCAGCAGGATAGGCCCCTTATGGAT TCCGCGATCAGATGCTTGCATTTAATGTATGAAAGAGATTGCAGGCATCAGTTCTGCCCCCCTGTTTTGTGGCTTTCACCTGCTAGAAAGAGCCGGGCTC CAATTGCAGTTGCTGCCAGAACTCATGAAGCTATGTCAGCTAATATAAAATCAGATGATGCTCTGACTGTTCCAAGCATGGGTTCTGTAATCACGGTGAC TCCACATGTATATCCATTTGAAGAAAGGGTTCAAATGTTTAGAGAGTTCATAAACATGGATAAAGTCTCTAGAAAAATGGCTGGTGAATTTACAGGACCT GGTTCACGAGCTGTGGAGATTGTAGTTCGTCGCAGTCATATTGTTGAAGATGGATTTCAGCAGCTTAATTCTCTTGGGTCAAGGTTGAAGTCATCCATTC ATGTTTCATTTGTTAGTGAATGTGGCCTTCCGGAGGCTGGTTTGGACTACGGTGGGCTATCTAAAGAGTTTCTGACAGATATATCAAAATCTGCCTTTTC TCCTGAGCATGGGCTATTTTCACAAACCTCAACTTCGGAGAGACATCTAATTCCCAATCCAACTGCAAAATATCTAGAGAATGGTATCCAGATGATTGAA TTTCTCGGAAGAGTTGTTGGGAAAGCTCTATATGAAGGAATATTACTAGATTACTCCTTTTCACATGTGTTTGTTCAAAAGCTGTTAGGCCGATATAGCT TTCTTGATGAACTATCAACACTTGATCCAGAGCTGTACAGGAATGTCTTGTATGTGAAGCATTATGATGGTGACGTCAAGGACCTCTCCCTTGACTTCAC AGTCACTGAAGAATTATTTGGTAAACGGCATGTCATTGAGCTGAAACCTGGGGGTAAGGATGTTTGTGTGTCAAATGAGAACAAGATGCAGTATGTTCAT GCAATGGCTGATTATAAACTCAATCGACAGATATTGCCCTTTTCAAATGCATTTTATAGAGGGCTAGCTGATCTTATATCACCATCTTGGTTGAAATTGT TCAATGCAAGTGAATTCAATCAGTTACTTTCAGGTGGTGACCTTGACATTGATGTTGATGATTTAAGAAATTACACACGATACACAGGTGGCTATTCTGA GGGGAGTCGAACAATTAAACTTTTTTGGGAGGTAATTAAAGGATTTGAACCAAATGAACGCTGTATGCTGCTTAAATTTGTGACCAGCTGCTCTCGAGCT CCATTACTTGGGTTCAAACACTTGCAGCCATCCTTTACAATCCATAAGGTCTCATGTGATGCCTCTCTTTGGGCAACAATTGGAGGACAAGATGTGGAGC GGCTTCCATCAGCTTCTACCTGCTACAATACTCTCAAGCTTCCAACATACAAACGTGCAAGCACTTTGAGAGCAAAAATTCTTTATGCAATCAATTCAAA TACTGGATTTGAACTTTCTTAA
AA sequence Show only first row Show all	>Potri.016G096500.8 pacid=42809781 polypeptide=Potri.016G096500.8.p locus=Potri.016G096500 ID=Potri.016G096500.8.v4.1 annot-version=v4.1 MDETPSRKHQVSLRGASAREISRDALLQKVSHERELRNYARRATASAIFIQRVWRRFIVTKKVAAELQLEWEAEAALVKNDLTIMGGSWISTRVLRPFLF FVHCLSTRHHKIRDADIPCLHTCFKLLLESINSTDLGNNFCALALGTPEERRTWTYQSQKLVSLCSIILANCDKSHQRAQDIMVLTSLAMRLLVVLTDQK CWKSITNNSPKDADVAWKDLVRFMARPKSGLYLSIRRYINNLDIHFCPQTSTLAQTDDRFLITASAITLALRPFNVTNFDFIGPDVVDINSAPAQYYLFL LTIPWLTQRLPAVLLPALKHKSILSPCFQTLLILRDNILKEMSEMDQLKILHSSKAIPPVAWALANTICLVTGDENDYVEPGGLNQGLDYAVYVHVVIIL AENLLSWLDGGGGTEKENQYAQVIAETSAEPFGKALCEIETTCALKMTYVSLLRPVCQQWHLTKLLAMSKMDANSNGDETLPTKTLKYSGKLNLLGIAYF YSCMLRIFAILNPTVGSLPVLNMLSFTPGFPVTLWEVLENLLFPGHGGISVVNDFHTRKVSANKNDGFLKKQQKQPSKDGGNKLVNVLHKLTGKSQAGVD HGDSVNGNPSAQVGDDLHDAWDVELLRCGPQKISREMSCLLHLFCGTYSHLLLVLDDIEFYEKQVPFMLEQQQRIASVLNTLAYNGLAHSISQQDRPLMD SAIRCLHLMYERDCRHQFCPPVLWLSPARKSRAPIAVAARTHEAMSANIKSDDALTVPSMGSVITVTPHVYPFEERVQMFREFINMDKVSRKMAGEFTGP GSRAVEIVVRRSHIVEDGFQQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFSPEHGLFSQTSTSERHLIPNPTAKYLENGIQMIE FLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNVLYVKHYDGDVKDLSLDFTVTEELFGKRHVIELKPGGKDVCVSNENKMQYVH AMADYKLNRQILPFSNAFYRGLADLISPSWLKLFNASEFNQLLSGGDLDIDVDDLRNYTRYTGGYSEGSRTIKLFWEVIKGFEPNERCMLLKFVTSCSRA PLLGFKHLQPSFTIHKVSCDASLWATIGGQDVERLPSASTCYNTLKLPTYKRASTLRAKILYAINSNTGFELS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	0	1
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	1.00	0.8614
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	2.82	0.8215
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	2.82	0.8523
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	3.00	0.8377
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	5.47	0.8175
AT1G02890			AAA-type ATPase family protein...		Potri.002G205900 [exp]	5.91	0.8050
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.003G033450 [exp]	6.00	0.7947
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079450 [exp]	6.92	0.8157
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	7.74	0.7815
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	8.30	0.7663

Compare expression of checked genes

Potri.016G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.