Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G20810 97 / 3e-24 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 77 / 1e-17 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 75 / 2e-15 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 73 / 7e-15 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G45680 69 / 6e-14 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT3G12340 69 / 3e-13 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 66 / 6e-13 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 67 / 7e-13 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT4G39710 65 / 1e-12 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254900 [exp] 90 / 1e-21 AT1G20810 272 / 5e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 82 / 1e-17 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 77 / 5e-16 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G149400 [exp] 76 / 2e-15 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 74 / 3e-15 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.001G075500 [exp] 65 / 1e-12 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.012G119800 [exp] 64 / 2e-12 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 61 / 6e-11 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G079700 [exp] 61 / 6e-11 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035560 [exp] 280 / 6e-96 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027729 [exp] 263 / 1e-88 AT3G10060 285 / 1e-97 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10016037 [exp] 95 / 2e-23 AT1G20810 258 / 2e-87 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 82 / 6e-18 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 81 / 2e-17 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10025158 [exp] 76 / 2e-16 AT1G20810 236 / 3e-78 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038905 [exp] 76 / 2e-15 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10015029 [exp] 74 / 5e-15 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10038216 [exp] 73 / 2e-14 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 73 / 2e-14 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Potri.016G096600.1 pacid=42810153 polypeptide=Potri.016G096600.1.p locus=Potri.016G096600 ID=Potri.016G096600.1.v4.1 annot-version=v4.1 ATGGAACTGATCTCCCTCTTCCCTAGCTATCATCAAAACCCCACTGCCATTCTACTCCGCGAGCCTCTCCTCTCCATTCCCATCACAAAGAGGAGGCTGT CCAACGGAAATTCAGGTGCGTTGAAATGTCGCTCCTCACCGTCTTCCTCTGATGATGAGACTACAAAACCAACCCCACTATCTTTGCACCAGGAGGGAAG GAGGGCACTCGTTGCTTCTCTCCTTTCAACTGCTGTTGGGATTTATGTCTGTGATGTGGCCGAGGCTGCTAGCACGAGTAGAAGAGCTCTTAGAGCATCA AAAATACCGGAGAGTGACTTCACAACCCTCTCCAATGGTCTGAAGTACTATGACTTGAAGGTCGGGGGTGGACCTAAGGCCGTGAAGGGATCTCGGGTTG CAGTTCACTATGTTGCCAAGTGGAAGGGAATCACGTTTATGACTAGTAGACAGGGACTCGGTGTTGGAGGTGGAACGCCTTATGGATTTGACGTGGGCCA ATCTGAGAGGGGAGCGGTCCTTAAAGGATTAGATCTTGGGGTTGAAGGCATGCGTGTAGGAGGCCAGCGTTTGCTAGTAGTTCCTCCTGAGCTAGCATAT GGTAGTAAGGGAGTACAAGAAATTCCTCCAAATGCAACCATAGAGTTGGATGTTGAACTGCTGGCCATCAAGCAAAGCCCCTTTGGGTCTCCCGTAAAAG TTATTGAAGGTTAA
AA sequence Show only first row Show all	>Potri.016G096600.1 pacid=42810153 polypeptide=Potri.016G096600.1.p locus=Potri.016G096600 ID=Potri.016G096600.1.v4.1 annot-version=v4.1 MELISLFPSYHQNPTAILLREPLLSIPITKRRLSNGNSGALKCRSSPSSSDDETTKPTPLSLHQEGRRALVASLLSTAVGIYVCDVAEAASTSRRALRAS KIPESDFTTLSNGLKYYDLKVGGGPKAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGQSERGAVLKGLDLGVEGMRVGGQRLLVVPPELAY GSKGVQEIPPNATIELDVELLAIKQSPFGSPVKVIEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Potri.016G096600 [exp]	0	1
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	1.41	0.9860
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	2.00	0.9826
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	4.24	0.9766	FBP.1
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.013G006100 [exp]	6.48	0.9734
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	6.70	0.9754	Pt-PPH1.1
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Potri.012G068500 [exp]	8.12	0.9745
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Potri.004G224500 [exp]	9.79	0.9558
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	11.40	0.9638
AT5G04900		NOL	NYC1-like (.1)		Potri.008G014200 [exp]	11.48	0.9605
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	12.32	0.9651

Compare expression of checked genes

Potri.016G096600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.