Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36670 579 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 533 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G08210 469 / 2e-162 Eukaryotic aspartyl protease family protein (.1) AT1G05840 267 / 2e-83 Eukaryotic aspartyl protease family protein (.1) AT1G65240 260 / 3e-81 Eukaryotic aspartyl protease family protein (.1) AT5G36260 257 / 8e-80 Eukaryotic aspartyl protease family protein (.1) AT3G02740 246 / 2e-75 Eukaryotic aspartyl protease family protein (.1) AT3G25700 155 / 9e-42 Eukaryotic aspartyl protease family protein (.1.2) AT5G43100 145 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT1G44130 137 / 9e-36 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118800 [exp] 858 / 0 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 551 / 0 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 541 / 0 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 263 / 7e-82 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 253 / 2e-78 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 152 / 7e-40 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 143 / 2e-36 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 131 / 3e-33 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G069600 [exp] 126 / 2e-31 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027732 [exp] 619 / 0 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 606 / 0 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 605 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 498 / 3e-173 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 489 / 8e-170 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 276 / 5e-87 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 274 / 3e-86 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 265 / 1e-82 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 263 / 6e-82 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 256 / 3e-79 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G096700.1 pacid=42810523 polypeptide=Potri.016G096700.1.p locus=Potri.016G096700 ID=Potri.016G096700.1.v4.1 annot-version=v4.1 ATGCGGGGTTTATGGCCCCCTTTCTTCATCACTATACTACTACTACTACTATTATTATTCATGTCTGTGTCGGTGGTTTACTGCGCTAGTCTTCTCCAAC TGGAGAGGGCTTTTCCTTTAAACAACCACGGTCTTGAACTCTCCCAACTTAGAGCTCGAGACCGACTCAGACATGCCCGTCTTTTACAAGGCTTTGTTGG TGGCGTTGTCGACTTCTCTGTTCAAGGTTCCCCCGATCCTTACCTCGTCGGGGTCACCGGAGCTTCAGAGCCCTTACTTTATTTTACAAAAGTGAAATTG GGCTCTCCTCCTAGAGAATTCAATGTGCAGATTGATACCGGAAGTGATGTCTTGTGGGTCTGCTGCAATTCCTGCAATAATTGCCCACGTACTAGTGGCC TTGGAATTCAGCTCAATTTCTTTGATTCCAGCAGCTCATCAACTGCAGGGCTGGTCCACTGTTCAGACCCAATCTGTACTTCAGCAGTTCAAACCACAGT AACTCAATGCTCTCCTCAGACTAATCAATGCAGTTACACATTCCAATATGAAGATGGAAGTGGGACATCAGGCTATTATGTGTCCGATACACTTTATTTT GATGCTATTTTGGGGGAGTCATTAGTCGTTAACTCTTCAGCTCTCATTGTCTTTGGGTGCAGTACCTTCCAGTCTGGGGACTTGACTATGACCGATAAAG CAGTTGATGGGATTTTTGGATTTGGCCAGGGGGAACTCTCTGTTATATCACAATTGTCAACCCACGGGATAACACCCAGAGTGTTCTCTCATTGCTTGAA AGGAGAGGGCATTGGAGGTGGTATACTGGTTCTTGGTGAGATTCTGGAGCCAGGCATGGTTTATAGTCCACTTGTCCCATCACAGCCTCATTATAATTTA AATCTACAAAGCATTGCTGTTAATGGGAAATTGTTGCCAATTGATCCATCAGTGTTTGCAACATCGAATAGCCAAGGAACAATTGTTGACTCTGGAACAA CTTTGGCGTACCTTGTGGCAGAAGCTTATGATCCTTTTGTTAGTGCTGTGAATGTCATTGTCTCGCCATCTGTTACACCTATAATATCTAAAGGAAACCA ATGTTATCTTGTCTCAACCAGTGTATCTCAGATGTTTCCCCTGGCCAGTTTTAACTTTGCTGGGGGTGCATCTATGGTGTTAAAACCTGAAGACTACCTT ATACCTTTTGGTCCCAGTCAGGGTGGTTCTGTGATGTGGTGCATTGGTTTTCAGAAAGTTCAAGGAGTAACTATCTTAGGAGATCTTGTTCTGAAAGATA AGATTTTTGTATATGATTTAGTACGACAACGGATTGGTTGGGCTAACTATGACTGCTCCTTATCTGTAAATGTTTCTGTAACTTCTAGTAAGGACTTCAT CAATGCAGGACAGCTGAGTGTGAGCAGCTCATCAAGGGACATCATGCTCTTTGAGCTGCTGCCTCTGACCGTTATGGTTCTCACAATGCACATATTATTG TTGGAGTTCAAATTTTTGTGA
AA sequence Show only first row Show all	>Potri.016G096700.1 pacid=42810523 polypeptide=Potri.016G096700.1.p locus=Potri.016G096700 ID=Potri.016G096700.1.v4.1 annot-version=v4.1 MRGLWPPFFITILLLLLLLFMSVSVVYCASLLQLERAFPLNNHGLELSQLRARDRLRHARLLQGFVGGVVDFSVQGSPDPYLVGVTGASEPLLYFTKVKL GSPPREFNVQIDTGSDVLWVCCNSCNNCPRTSGLGIQLNFFDSSSSSTAGLVHCSDPICTSAVQTTVTQCSPQTNQCSYTFQYEDGSGTSGYYVSDTLYF DAILGESLVVNSSALIVFGCSTFQSGDLTMTDKAVDGIFGFGQGELSVISQLSTHGITPRVFSHCLKGEGIGGGILVLGEILEPGMVYSPLVPSQPHYNL NLQSIAVNGKLLPIDPSVFATSNSQGTIVDSGTTLAYLVAEAYDPFVSAVNVIVSPSVTPIISKGNQCYLVSTSVSQMFPLASFNFAGGASMVLKPEDYL IPFGPSQGGSVMWCIGFQKVQGVTILGDLVLKDKIFVYDLVRQRIGWANYDCSLSVNVSVTSSKDFINAGQLSVSSSSRDIMLFELLPLTVMVLTMHILL LEFKFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36670			Eukaryotic aspartyl protease f...		Potri.016G096700 [exp]	0	1
AT3G05250			RING/U-box superfamily protein...		Potri.005G035600 [exp]	8.83	0.8741	RZF.2
AT2G14255			Ankyrin repeat family protein ...		Potri.009G029800 [exp]	11.00	0.7483
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Potri.008G076900 [exp]	13.56	0.8625
AT4G02210			unknown protein		Potri.005G252500 [exp]	17.74	0.8293
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107300 [exp]	20.56	0.8577
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107600 [exp]	22.00	0.8513
AT3G59780			Rhodanese/Cell cycle control p...		Potri.019G098950 [exp]	23.34	0.8383
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.009G055600 [exp]	28.46	0.7645
AT1G54730			Major facilitator superfamily ...		Potri.013G027500 [exp]	37.30	0.7190
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Potri.001G024800 [exp]	43.47	0.8145	ANNAT3.1

Compare expression of checked genes

Potri.016G096700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.