Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DOGT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53150 626 / 0 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G36800 557 / 0 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36770 548 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G36780 547 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 537 / 0 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36750 536 / 0 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36790 529 / 0 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 479 / 2e-165 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G15480 414 / 3e-140 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 412 / 1e-139 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120600 [exp] 890 / 0 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.012G048700 [exp] 535 / 0 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.009G099032 [exp] 438 / 1e-149 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 437 / 2e-149 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 435 / 2e-148 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 435 / 2e-148 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 433 / 1e-147 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303300 [exp] 432 / 3e-147 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098966 [exp] 431 / 1e-146 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014401 [exp] 626 / 0 AT3G53150 537 / 0.0 UDP-glucosyl transferase 73D1 (.1) Lus10014402 [exp] 495 / 1e-171 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 487 / 2e-168 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016268 [exp] 473 / 7e-163 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 470 / 6e-162 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 464 / 1e-159 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10027739 [exp] 462 / 4e-159 AT2G36780 453 / 2e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 459 / 1e-157 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10003322 [exp] 457 / 1e-156 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10023894 [exp] 449 / 1e-153 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G097400.1 pacid=42810529 polypeptide=Potri.016G097400.1.p locus=Potri.016G097400 ID=Potri.016G097400.1.v4.1 annot-version=v4.1 ATGAAATCAGAACTGGGCGTTGATGACTTGTTCAAAGTCAAGCTCGAAATAATTAAGACTTGGCAACATGGGAGCGCAAATCATTCACATGACAATACTC CTTCTCTTTTCCCTTCACCACTCTGTATACATAGAACCATTGCCAGCTCTGCTGTCATGGCGCCCCCAATCTCTAGCCAGCTGCACTTCGTGTTGATCCC ACTTATGGCACAAGGGCACATGATCCCTATGATAGACATGGCCAGGCTCATTTCAGAGCGAGGTGTGACTGTAAGCTTGGTCACCACGCCTCACAATGCA TCAAGATTTGAGGCAATCATTGATAGAGCAAGAGAATCTGGGCTCCCTATTCGGCTTGTACAGATACGGTTTCCATGCGAGGAAGTTGGGCTCCCTATCG GCCTCGAGAATCTTGACACGTTACCTTCAAGAGACCTGCTGAAGAAATTCTATGTTGCAGTCGCTAGGCTGCAGCAGCCATTAGAACTCCTTCTTGAACA TGCGAAGCCTCCTCCAAGCTGCATAATATCAGACAAGTGCTTATCCTGGACATCCAAAACCGCTCAACGTTTCAACATCCCCCGGATTGTTTTTCACGGG ATGTGCTGCTTTTCTCTGTTGAGTTCTCATAATATCAGGCTTCACAAAGCTCACCTTTCAGTTACTTCAGATTCAGAACCTTTTGTTGTTCCAGGGATGC CACAAAGTTTTGAGGTAACAAAGGCTCAGCTACCGGGAGCATTTGTTAGCTTACCTGACTTGGACGACGTCCGCAACAAGATGCAAGAGGCTGAATCTAC AGCTTATGGGGTTGTAGTTAATAGTTTTGACGAGTTGGAGCATGGTTGCGCTGAGGAGTACACGAAGGCTCTAAAGAAGAAGGTATGGTGCATTGGACCA GTTTCTTTATGTAACAAGAATAACTTGGATAAGTTTGAGAGAGGCAACAAGGCTTCAATTGACGAGAAACAATGCTTGGAGTGGCTTGACTCTATGAAGC CAGGCTCGGTTATTTACGCTTGCCTCGGTAGCCTATGTCGCCTAGTGCCATCGCAGTTAATAGAACTAGGTTTGGGTTTGGAAGCATCTAAACAACCATT TATCTGGGTTGTGAAAACTGGAGAGAAGGGTTCTGAATTAGAGGAATGGTTCGTGAAGGAGAAATTTGAAGAAAGGATCAAAGGAAGGGGGCTTTTGATA AAAGGCTGGGCTCCTCAAGTCCTTATTTTGTCCCATACATCAATTGGAGGATTCTTAACTCATTGTGGTTGGAACTCTACAGTTGAAGGGATCTGCTCGG GGGTGCCAATGATAACATGGCCTCAATTTTCTGAGCAATTCCTTAATGAGAAGCTAATTGTTGAGATTTTAAGGATCGGCGTGCGAGTAGGCGTTGAGGT TCCAGTGAGATGGGGAGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGAAGTCAAGAAGGCAGTAATTACGTTGATGGATGCAGGTGGAGAAGAA AGCAAGAAGAGGAGGAAGAGAGCAATTGAACTTGGAAAATCGGCAAATCAGGCTATGGAATTAGGTGGATCTTCCAACCTCAACTTGTCATTCTTAATGC AAGATATTACGAAGCAACAAACTCAAAATAAGGGTTAA
AA sequence Show only first row Show all	>Potri.016G097400.1 pacid=42810529 polypeptide=Potri.016G097400.1.p locus=Potri.016G097400 ID=Potri.016G097400.1.v4.1 annot-version=v4.1 MKSELGVDDLFKVKLEIIKTWQHGSANHSHDNTPSLFPSPLCIHRTIASSAVMAPPISSQLHFVLIPLMAQGHMIPMIDMARLISERGVTVSLVTTPHNA SRFEAIIDRARESGLPIRLVQIRFPCEEVGLPIGLENLDTLPSRDLLKKFYVAVARLQQPLELLLEHAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHG MCCFSLLSSHNIRLHKAHLSVTSDSEPFVVPGMPQSFEVTKAQLPGAFVSLPDLDDVRNKMQEAESTAYGVVVNSFDELEHGCAEEYTKALKKKVWCIGP VSLCNKNNLDKFERGNKASIDEKQCLEWLDSMKPGSVIYACLGSLCRLVPSQLIELGLGLEASKQPFIWVVKTGEKGSELEEWFVKEKFEERIKGRGLLI KGWAPQVLILSHTSIGGFLTHCGWNSTVEGICSGVPMITWPQFSEQFLNEKLIVEILRIGVRVGVEVPVRWGDEEKVGVLVKKDEVKKAVITLMDAGGEE SKKRRKRAIELGKSANQAMELGGSSNLNLSFLMQDITKQQTQNKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.016G097400 [exp]	0	1	Pt-DOGT1.1
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	1.00	0.9431
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	1.41	0.9423	Pt-WRKY11.1
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	3.00	0.9325
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	3.60	0.9099
AT4G21920			unknown protein		Potri.004G015900 [exp]	4.24	0.9273
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.006G086300 [exp]	4.58	0.9205
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.003G128800 [exp]	5.65	0.9187
AT3G06130			Heavy metal transport/detoxifi...		Potri.005G036300 [exp]	6.63	0.9158
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.013G161100 [exp]	7.48	0.9316
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385300 [exp]	8.24	0.8979

Compare expression of checked genes

Potri.016G097400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.