Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32600 370 / 5e-129 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121300 [exp] 421 / 2e-148 AT2G32600 372 / 4e-130 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021506 [exp] 386 / 6e-135 AT2G32600 391 / 9e-138 hydroxyproline-rich glycoprotein family protein (.1) Lus10022607 [exp] 322 / 2e-109 AT2G32600 334 / 4e-115 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12874 [poplar] [flax] zf-met Zinc-finger of C2H2 type CL0361 [poplar] [flax] PF16835 [poplar] [flax] SF3A2 Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
Representative CDS sequence Show only first row Show all	>Potri.016G097600.1 pacid=42810334 polypeptide=Potri.016G097600.1.p locus=Potri.016G097600 ID=Potri.016G097600.1.v4.1 annot-version=v4.1 ATGGATAGAGAATGGGGTTCGAAGCCAGGCAGCGGAGGCGCCGCCTCCGCCCAGAACGAGGCAATCGACCGCCGCGAGCGTCTCCGACGTCTTGCCCTGG AGACAATCGATCTGGCAAAAGATCCCTATTTCATGCGCAACCACCTCGGCAGTTATGAGTGTAAGCTGTGTCTGACTTTGCACAACAATGAAGGGAACTA CTTGGCTCACACTCAAGGGAAGCGGCATCAGACCAATTTGGCTAAGAGAGCTGCTCGCGAGGCTAAGGATGCTCCTGCTCTTCCTCAGCCTAATAAGCGC AAAGTTAACATTCGCAAGACAGTCAAAATTGGCAGGCCTGGATATCGGGTGACAAAGCAATTCGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGA TTGAATATCCTGAGATAGAGGACAATACAAAGCCAAGACATCGATTTATGTCATCTTATGAACAGAGAATTGAGGCCAATGATAAGAGGTTTCAGTATCT TTTATTTTCAGCAGAACCTTATGAGATAATCGCTTTCAAGGTTCCTAGCACAGAAATTGACAAATCTACTCCGAAGTTCTTCTCACATTGGGATCCAGAC TCCAAGATGTTCACGTTGCAGTTATATTTTAAATTGAAGCCACCAGAGGCGAACAAACCTCAATCTGTTGCTGCAGCTAACAGCACTGTGCCTTCCCAAC CACCACCGCCCCTGCCACCACAAGGACTTCCAGCAGGATCTAGACCCCCACCACCACCGATGCCTGCATCATTACCCCCTCCTCCACCTCCTGCCATGGC TAATGGCCCTAGGCCTATGCCTCCAGGTGGAGCTCCACCTGCCCCACCTCCACCTCCTGGTGGCAGTGGTGCGATGGTGAATTTCACACCTGGCACTCAA GCAGGCAGGCCCTCATCAATGCTGCCTCCCCATGGTTTTCTTGGGCAACAGATGCAGGGCCAGACAATACGTCCTCCTCTGCTACCTCCCAACATGGGAC AGTAG
AA sequence Show only first row Show all	>Potri.016G097600.1 pacid=42810334 polypeptide=Potri.016G097600.1.p locus=Potri.016G097600 ID=Potri.016G097600.1.v4.1 annot-version=v4.1 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPALPQPNKR KVNIRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSYEQRIEANDKRFQYLLFSAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD SKMFTLQLYFKLKPPEANKPQSVAAANSTVPSQPPPPLPPQGLPAGSRPPPPPMPASLPPPPPPAMANGPRPMPPGGAPPAPPPPPGGSGAMVNFTPGTQ AGRPSSMLPPHGFLGQQMQGQTIRPPLLPPNMGQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	0	1
					Potri.002G146750 [exp]	1.41	0.8962
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	2.23	0.9077
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.013G104100 [exp]	3.16	0.8850
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.003G120201 [exp]	4.47	0.8943
					Potri.013G048150 [exp]	6.32	0.8793
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	8.12	0.8638
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G002100 [exp]	9.16	0.8770
AT1G11650		ATRBP45B	RNA-binding (RRM/RBD/RNP motif...		Potri.004G017200 [exp]	10.53	0.8512
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	12.68	0.8817
AT5G20200			nucleoporin-related (.1)		Potri.018G129900 [exp]	13.22	0.8523

Compare expression of checked genes

Potri.016G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.