Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALPHA.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 349 / 5e-124 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT3G09910 301 / 4e-105 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G43890 293 / 5e-102 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT1G02130 157 / 1e-48 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT4G35860 156 / 7e-48 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT3G11730 152 / 1e-46 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT3G09900 151 / 8e-46 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G59840 150 / 1e-45 Ras-related small GTP-binding family protein (.1) AT3G53610 149 / 2e-45 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT4G17530 148 / 8e-45 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121400 [exp] 355 / 2e-126 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G074400 [exp] 302 / 2e-105 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.005G063500 [exp] 291 / 4e-101 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.010G229600 [exp] 291 / 6e-101 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.007G105500 [exp] 290 / 7e-101 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.008G032000 [exp] 288 / 8e-100 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.014G049400 [exp] 157 / 2e-48 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 156 / 3e-48 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 155 / 1e-47 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014409 [exp] 339 / 7e-120 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10022608 [exp] 334 / 7e-118 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 331 / 7e-117 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 330 / 2e-116 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10029745 [exp] 296 / 6e-98 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 267 / 2e-87 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10040423 [exp] 241 / 6e-81 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10038671 [exp] 218 / 1e-71 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10037940 [exp] 215 / 1e-70 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10000595 [exp] 152 / 3e-46 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.016G097800.1 pacid=42810442 polypeptide=Potri.016G097800.1.p locus=Potri.016G097800 ID=Potri.016G097800.1.v4.1 annot-version=v4.1 ATGGGATCCTCTTCAGGATCATATGATCTATCATTCAAGATCTTGTTGATCGGTGATTCTGGGGTTGGCAAAAGTAGTCTTCTTGTCAGTTTCATTTCCA GTTCTGTTGAGGATCTTGCACCAACTATTGGTGTGGATTTTAAGATCAAGCAGCTAACAGTCGGAGGAAAGCGATTGAAGCTGACAATTTGGGATACTGC TGGACAGGAGAGGTTCCGAACACTGACTAGTTCTTACTACAGAAATGCCCAAGGGATCATTCTTGTTTATGATGTGACAAGGAGAGAAACCTTTACAAAC TTATCAGACGTGTGGGGTAAAGAAGTTGAGCTCTTCTCCACAAATCAAGACTGTGTCAAGATGCTCGTTGGAAATAAAGTTGATAAAGAGTCTGGAAGGG ATGTAACTAAAGATGAGGGGATGGCTCTTGCTAAACAGCATGGTTGTCTGTTTCTTGAATGCAGTGCGAAAACTAGAGAAAATGTGGAGCAATGCTTTGA AGAGCTGGCATTGAAGATAATGGAGGTCCCTAGTCTTTTGGAAGAAGGATCTACGGCCGTGAAGAGAAACATTTTAAAGCAGAAACCAGAACACCATGTA GCTTCTAATGGTGGCTGTTGCTCTTAA
AA sequence Show only first row Show all	>Potri.016G097800.1 pacid=42810442 polypeptide=Potri.016G097800.1.p locus=Potri.016G097800 ID=Potri.016G097800.1.v4.1 annot-version=v4.1 MGSSSGSYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTN LSDVWGKEVELFSTNQDCVKMLVGNKVDKESGRDVTKDEGMALAKQHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHHV ASNGGCCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	0	1	ALPHA.3
AT1G34350			unknown protein		Potri.019G085500 [exp]	1.41	0.9281
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.010G222000 [exp]	2.82	0.9280	VMA10.2
AT3G05725			Protein of unknown function (D...		Potri.005G019900 [exp]	6.08	0.8920
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.012G069900 [exp]	7.34	0.9121
AT1G62045			unknown protein		Potri.004G013601 [exp]	7.41	0.9115
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.012G107900 [exp]	7.74	0.8988
AT2G30700			unknown protein		Potri.007G133733 [exp]	7.74	0.9054
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	8.71	0.9230	Pt-SSH1.2
AT5G02440			unknown protein		Potri.009G030100 [exp]	8.83	0.9068
AT2G32580			Protein of unknown function (D...		Potri.014G155600 [exp]	8.83	0.9252

Compare expression of checked genes

Potri.016G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.