Plant FIBer expression Database

Potri.016G098150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G098150.1 pacid=42808919 polypeptide=Potri.016G098150.1.p locus=Potri.016G098150 ID=Potri.016G098150.1.v4.1 annot-version=v4.1
ATGATTGCAGCTGCAAAACAAAAGGTTGCCATATATAGCAGGAGACCAGCCTATGAATCCAGGGCAACAAGACCGAAAACTGGGGACAAGCCTCTCATTC
ATGGGGGAGTCAGAAACCATCATCATCCTCATCAACAATCAAAAGAACTTCATCCTCTATTCCTCATCAACGAACACTGGAAAATCTTCTTGTTTCTCCT
CCACTTGTCCCTCAATCTCTCTCTCGGTATAATCAACCCAAACCACCGTATACTACCCCAACCATACTCCTCTCCTCTATCAAAACACAACCTCCAGCCT
TCCATGATCAAACGCTTTCATTGCCCCAATTGTGCCTCCTCTCAACAGTTTCTCATCCACCATAACCAAGCCTTTCAAACCGAACCACCGAAAACTGATA
AACAACATACTAGTTGCTACTGCCCCTTGAATGAAACACCACTAATATCTAGAATATCAAGAGCAATTCTAGGAAAAGTCAGCCCCTAA
AA sequence
>Potri.016G098150.1 pacid=42808919 polypeptide=Potri.016G098150.1.p locus=Potri.016G098150 ID=Potri.016G098150.1.v4.1 annot-version=v4.1
MIAAAKQKVAIYSRRPAYESRATRPKTGDKPLIHGGVRNHHHPHQQSKELHPLFLINEHWKIFLFLLHLSLNLSLGIINPNHRILPQPYSSPLSKHNLQP
SMIKRFHCPNCASSQQFLIHHNQAFQTEPPKTDKQHTSCYCPLNETPLISRISRAILGKVSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G098150
[exp]
0 1
AT1G24290 AAA-type ATPase family protein... Potri.011G023800
[exp]
7.74 0.8157
AT4G22140 EBS EARLY BOLTING IN SHORT DAYS, P... Potri.014G157100
[exp]
14.14 0.7014
AT1G74350 Intron maturase, type II famil... Potri.005G063750
[exp]
16.91 0.8173
AT3G52210 S-adenosyl-L-methionine-depend... Potri.010G233100
[exp]
26.24 0.7618
AT4G04670 Met-10+ like family protein / ... Potri.004G015200
[exp]
36.33 0.7798
AT3G62330 Zinc knuckle (CCHC-type) famil... Potri.014G118100
[exp]
36.61 0.7740
AT3G56030 Tetratricopeptide repeat (TPR)... Potri.008G141700
[exp]
36.87 0.7571
AT5G46920 Intron maturase, type II famil... Potri.001G147801
[exp]
37.68 0.7888
AT2G39620 Pentatricopeptide repeat (PPR)... Potri.008G052200
[exp]
37.97 0.7800
AT1G05590 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-he... Potri.001G232600
[exp]
38.20 0.7708

Potri.016G098150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.