Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) AT5G20140 94 / 6e-22 SOUL heme-binding family protein (.1.2) AT2G37970 83 / 9e-19 SOUL-1 SOUL heme-binding family protein (.1) AT1G17100 51 / 2e-07 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109400 [exp] 83 / 6e-19 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 84 / 3e-18 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.001G379000 [exp] 54 / 2e-08 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 52 / 7e-08 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022712 [exp] 331 / 4e-114 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 247 / 8e-82 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10017193 [exp] 76 / 3e-16 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10013345 [exp] 77 / 8e-16 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10000227 [exp] 68 / 2e-13 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10019445 [exp] 64 / 3e-11 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2) Lus10001847 [exp] 64 / 3e-11 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10041532 [exp] 44 / 8e-05 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1) Lus10012559 [exp] 43 / 0.0002 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [poplar] [flax] SHS2 PF04832 [poplar] [flax] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Potri.016G098500.3 pacid=42810209 polypeptide=Potri.016G098500.3.p locus=Potri.016G098500 ID=Potri.016G098500.3.v4.1 annot-version=v4.1 ATGCTTCTCAGCAACTGCACGCCTCCGGTTCCTACCATGATTCGGTATACTTCTCCATCTAAAATCAAATCCATGGCTACAGACAGGACCACAGCAACTT CTCCGCGGAGAAGGCCCATGTCGGCCTTCGAGGCTCGAGTCTCTCTCGTCCTTGCCCTCGCTTCTCAGGCTTCTTATCAGTCTCAAAGACGTAAATTTTT ATTCGATTTGGCTAATGAAACTACGAAATACTTGTTTCCAAAGAGAAGTGGGAGCCGGGATTTGGAGGAAGCTTTGATGGCAGTTCCAGACCTTGAAACG TTGAAGTACAAGGTATCGAGCAGGAAAGAAGGGTACGAGATTAGAGAACTTGAGCCTTATTTTGTTGCTGAGACGACGATGTCAGGGGAGACTGGATTTA ATTTCTATGGTGCCTCTCAGTCTTTCAATGTTTTAGCGGAGTACTTGTTTGGGAAGAACACGATGAAGGAGAAAATGGAAATGACTACGCCTGTAATTAC TCGCAAGACCCAGCCTGTGATGACCAAAGAGGGGAAGTGGCAAATGTCCTTTGTCATACCATCCAAGTACGGCGCTAATCTGCCTTTGCCCAAGGATCCA ACTGTGAGGGTTGAAGAGGTTCCGGGGAGAGTTGTTGCCGTCGTTGCTTTCTCAGGTTTTGTTACTGATGAAGAAGTTAAACAACGGGAATTGAAGTTAC GTAATGCTTTGAAGAAGGACCCAGAATTTAGAGTAAAAGACAGTGCTTCGGTGGAAGTTGCTCAGTACAATCCACCTTTTACTCTTCCGTTCACGCGCCG CAACGAGATTGCGCTGGAAGTGGAAAGGAAGGAAGAATAG
AA sequence Show only first row Show all	>Potri.016G098500.3 pacid=42810209 polypeptide=Potri.016G098500.3.p locus=Potri.016G098500 ID=Potri.016G098500.3.v4.1 annot-version=v4.1 MLLSNCTPPVPTMIRYTSPSKIKSMATDRTTATSPRRRPMSAFEARVSLVLALASQASYQSQRRKFLFDLANETTKYLFPKRSGSRDLEEALMAVPDLET LKYKVSSRKEGYEIRELEPYFVAETTMSGETGFNFYGASQSFNVLAEYLFGKNTMKEKMEMTTPVITRKTQPVMTKEGKWQMSFVIPSKYGANLPLPKDP TVRVEEVPGRVVAVVAFSGFVTDEEVKQRELKLRNALKKDPEFRVKDSASVEVAQYNPPFTLPFTRRNEIALEVERKEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10130			SOUL heme-binding family prote...		Potri.016G098500 [exp]	0	1
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.009G170640 [exp]	1.41	0.9703
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	1.41	0.9742
AT1G03670			ankyrin repeat family protein ...		Potri.018G077766 [exp]	2.44	0.9695
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.003G133700 [exp]	2.82	0.9654
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	3.46	0.9641
AT3G14470			NB-ARC domain-containing disea...		Potri.017G145000 [exp]	4.24	0.9580
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	4.47	0.9651
AT5G37360			unknown protein		Potri.019G023700 [exp]	4.69	0.9555
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094200 [exp]	7.07	0.9566
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.001G317600 [exp]	9.16	0.9618

Compare expression of checked genes

Potri.016G098500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.