Gene [POPLAR] | FIBexDB

External link

JGI Phytozome v13

[genome browser]

Popgenie

AspWood

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT2G39700	283 / 5e-96	ATHEXPALPHA1.6, ATEXP4, ATEXPA4	expansin A4 (.1)
AT2G37640	279 / 2e-94	ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3	ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
AT3G55500	278 / 3e-94	ATHEXPALPHA1.7, ATEXP16, ATEXPA16	EXPANSIN 16, expansin A16 (.1)
AT5G02260	268 / 3e-90	ATHEXPALPHA1.10, ATEXP9, ATEXPA9	expansin A9 (.1)
AT2G28950	260 / 5e-87	ATHEXPALPHA1.8, ATEXP6, ATEXPA6	ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1)
AT5G05290	255 / 4e-85	ATHEXPALPHA1.12, ATEXP2, ATEXPA2	EXPANSIN 2, expansin A2 (.1)
AT2G40610	252 / 8e-84	ATHEXPALPHA1.11, ATEXP8, ATEXPA8	expansin A8 (.1)
AT2G03090	244 / 6e-81	ATHEXPALPHA1.3, ATEXP15, ATEXPA15	EXPANSIN 15, expansin A15 (.1)
AT5G56320	242 / 9e-80	ATHEXPALPHA1.5, ATEXP14, ATEXPA14	EXPANSIN 14, expansin A14 (.1)
AT1G69530	238 / 3e-78	ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1	EXPANSIN 1, expansin A1 (.1.2.3.4.5)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.016G097500 [exp]	468 / 1e-168	AT2G39700	301 / 6e-103	expansin A4 (.1)
Potri.009G031800 [exp]	284 / 3e-96	AT2G39700	453 / 1e-163	expansin A4 (.1)
Potri.008G057100 [exp]	283 / 5e-96	AT2G39700	459 / 6e-166	expansin A4 (.1)
Potri.010G202500 [exp]	280 / 1e-94	AT2G39700	473 / 2e-171	expansin A4 (.1)
Potri.001G240900 [exp]	278 / 5e-94	AT2G39700	449 / 6e-162	expansin A4 (.1)
Potri.006G086100 [exp]	275 / 1e-92	AT2G37640	435 / 2e-156	ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Potri.019G057500 [exp]	249 / 1e-82	AT2G40610	374 / 2e-132	expansin A8 (.1)
Potri.001G001100 [exp]	245 / 4e-81	AT2G03090	375 / 5e-133	EXPANSIN 15, expansin A15 (.1)
Potri.006G108000 [exp]	244 / 1e-80	AT2G40610	379 / 2e-134	expansin A8 (.1)

Flax homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10014406 [exp]	316 / 3e-108	AT3G55500	304 / 7e-104	EXPANSIN 16, expansin A16 (.1)
Lus10027740 [exp]	296 / 3e-101	AT5G02260	265 / 2e-89	expansin A9 (.1)
Lus10023407 [exp]	280 / 1e-94	AT2G39700	445 / 3e-160	expansin A4 (.1)
Lus10040286 [exp]	278 / 9e-94	AT2G39700	447 / 4e-161	expansin A4 (.1)
Lus10040801 [exp]	276 / 2e-93	AT2G39700	456 / 1e-164	expansin A4 (.1)
Lus10016533 [exp]	276 / 3e-93	AT2G39700	456 / 9e-165	expansin A4 (.1)
Lus10024388 [exp]	263 / 4e-88	AT2G37640	430 / 3e-154	ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Lus10034227 [exp]	256 / 2e-85	AT2G40610	416 / 7e-149	expansin A8 (.1)
Lus10029038 [exp]	246 / 1e-81	AT2G40610	418 / 6e-150	expansin A8 (.1)
Lus10008603 [exp]	244 / 1e-80	AT2G40610	397 / 2e-141	expansin A8 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0159 [poplar] [flax]	E-set	PF01357 [poplar] [flax]	Expansin_C	Expansin C-terminal domain
CL0199 [poplar] [flax]	DPBB	PF03330 [poplar] [flax]	DPBB_1	Lytic transglycolase

Representative CDS sequence

Show only first row Show all

>Potri.016G098700.1 pacid=42810384 polypeptide=Potri.016G098700.1.p locus=Potri.016G098700 ID=Potri.016G098700.1.v4.1 annot-version=v4.1

ATGGCATCGCCTTTGAAACCTATGTTATCAACATTGCTGCTTTTAGCCATTGCCTTTCCTAATTGCCTGGCAAAATCGAAACCTTCCCTCTCAGGGAAAC

AAGCCATTCACCATGCAATTGGACGACTAGCCCACGACATTGAAATTCCCAAAAGGAATAAACCAAAGTTCCAGCCAAGCCCATGGAAGGAAGCTCATGC

AACTTTCTATGAAGGCGGCTCAGGAACATTCGGGGGAGCATGCAATTACAAAGATGTTGCGGGCCAAGGATATGGCATGAATACAGCTGCACTGAGCAGT

GTTCTGTTCAAAAATGGACAGGCCTGTGGTGCTTGTTTCGAAATCAAGTGCGCTGACAACCCTCAATGGTGCAAGCTAGGGCAGCCATCTCTCATTGTCA

CTGCAACTGACCATTGCCCACCAAATCCATCTCTCCCAAATGACAATGGAGGCTGGTGCAATGTGCCACGTGAGCATTTCGATGTAGCCAAGCCTGTATT

TAGCCAGCTTGCTGAGTACGAGGCCGGCATTATTCCAATCCAATATCGCAGGGTTCCATGCCAGAAGCAAGGAGGTATTCGATTCACTATATTGGGGAAT

CCTTGGTTCTATCAGGTCATTGTGTGGAATGTAGGGGGAGCTGGAGATGTTGTTGGTGTTCAAGTGAAGGGAGATGACAAGCTCAAGTGGACGCAAATGG

AACGAGATTGGGGGACAACTTGGAAAACCAGTGCTATTTTGCTTGGAGAGTCGCTATCCTTCCGTGTTAGTGCAAGCGATGACAGGGACTCGACTTCATG

GCATGTTACCCCTAAAAACTGGCAATTTGGCCAGACATACGAGGGCAAGAACTTCAAATAG

AA sequence

Show only first row Show all

>Potri.016G098700.1 pacid=42810384 polypeptide=Potri.016G098700.1.p locus=Potri.016G098700 ID=Potri.016G098700.1.v4.1 annot-version=v4.1

MASPLKPMLSTLLLLAIAFPNCLAKSKPSLSGKQAIHHAIGRLAHDIEIPKRNKPKFQPSPWKEAHATFYEGGSGTFGGACNYKDVAGQGYGMNTAALSS

VLFKNGQACGACFEIKCADNPQWCKLGQPSLIVTATDHCPPNPSLPNDNGGWCNVPREHFDVAKPVFSQLAEYEAGIIPIQYRRVPCQKQGGIRFTILGN

PWFYQVIVWNVGGAGDVVGVQVKGDDKLKWTQMERDWGTTWKTSAILLGESLSFRVSASDDRDSTSWHVTPKNWQFGQTYEGKNFK

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.016G098700 [exp]	0	1

Potri.016G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.016G098700 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.016G098700 coexpression network