Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40000 47 / 9e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G22400 45 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096100 [exp] 62 / 3e-12 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020217 [exp] 49 / 2e-07 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026840 [exp] 47 / 1e-06 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G098850.5 pacid=42809552 polypeptide=Potri.016G098850.5.p locus=Potri.016G098850 ID=Potri.016G098850.5.v4.1 annot-version=v4.1 ATGACCGCTTTTCCAAAACAATTCCTTTCTCAAAAGTTTGTAGAGTTATCAGCAGAAAGCCACATGCAAATGAAACCAAGCACACGTTGTCAGCAGAAAT CTGATTTCTTTGGTTTTGGTCTTTGGAGCAGGAGCGGCAGCAATGAAAAAAAAAGCCCCGCTGTTCTGATCATGAGGCACTATCCTCATAAAGCGTTCCA GGTCCTTTTTGGTTGGGGCACTGTAGCTTTTGCCTTCCATTTTCTGACACTAGGCCGAAAAACAAGTTCAGGAAGTTCCCTGGAGACGTCTACAAGTACA ACAGACCCATTGCCCATTCCTGGATTCCATTTCCTCCACATATCTAGAGCCTTGCGGAGGGTACCATCTTCACTACAGGGAACATCACATAACACTCGAT CATAA
AA sequence Show only first row Show all	>Potri.016G098850.5 pacid=42809552 polypeptide=Potri.016G098850.5.p locus=Potri.016G098850 ID=Potri.016G098850.5.v4.1 annot-version=v4.1 MTAFPKQFLSQKFVELSAESHMQMKPSTRCQQKSDFFGFGLWSRSGSNEKKSPAVLIMRHYPHKAFQVLFGWGTVAFAFHFLTLGRKTSSGSSLETSTST TDPLPIPGFHFLHISRALRRVPSSLQGTSHNTRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.016G098850 [exp]	0	1
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	4.00	0.7974
AT3G11310			unknown protein		Potri.010G018401 [exp]	4.47	0.8348
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Potri.010G195300 [exp]	12.00	0.7620
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	16.91	0.7561
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	17.66	0.6809
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.010G140500 [exp]	19.44	0.6798
AT5G05800			unknown protein		Potri.019G061000 [exp]	21.97	0.7681
AT4G31930			Mitochondrial glycoprotein fam...		Potri.006G261601 [exp]	23.02	0.7571
AT2G19080			metaxin-related (.1)		Potri.018G145080 [exp]	27.92	0.7729
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Potri.015G113300 [exp]	31.17	0.6364

Compare expression of checked genes

Potri.016G098850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.