Plant FIBer expression Database

Potri.016G099300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36895 313 / 9e-109 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023001
[exp]
338 / 6e-119 AT2G36895 305 / 6e-106 unknown protein
Lus10001393
[exp]
334 / 3e-117 AT2G36895 303 / 3e-105 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G099300.2 pacid=42809628 polypeptide=Potri.016G099300.2.p locus=Potri.016G099300 ID=Potri.016G099300.2.v4.1 annot-version=v4.1
ATGGCAGAAACCTCTGCTCTTTGTTTATCTCCCTTCTCTTCCCTCCCTTCTAACATTTATCGTTCCAGAGAACCCAATTCATATCTCTCCTTTGCCTCTC
CTTTTAAATCCTCAGCTTCGCACTCTCGCTCCTCTCGCTCCATTCGATTCACTTGTAAAGCTTCAGACTCTGGCAACTTCCTCGGCGATGAATCTCTTGG
TTTCTTTCCTTGGTCCGATGGCGACAACGATATTGAATGGGTTCGGGAAGAAAGAATCACGCTTTTCACAACTGATGGGCTCGTTCAGATTGGAGGCTCT
GTAGTTCCTCGACTTGTCGCTTCTTCCAACAGGAAGCGAGGGAAATCAAAAACTTCTCAGAGATTTCAACGTTTTCAAGAGAGTGATTACATGGATCCAA
ATCAAGGCTTATGCTTGGGTGCACTCTTTGATATTGCAGCAACTAATGGACTTGATACGGGGAGAAGGCTTTGTATCTTTGGGTTTTGCCGATCGATTGA
GATGTTGAGTGATGTTGTAGAAGACACTGTTTTGGAGCATGGTGGGGAGGTCGTGACTGCAGAGAAGGCCATCAAAGGTGGATTGCACGAAAAGCTAACA
ATGACGGTGGCAGTGCCATATCTTTGGGGGGTTCCACCTGCTTCCGAAACACTCCGTCTTGCTGTGCGGAGTGGTGGAGGGATTGTACAGAAGGTTTATT
GGCAATGGGATTTTTTGTAA
AA sequence
>Potri.016G099300.2 pacid=42809628 polypeptide=Potri.016G099300.2.p locus=Potri.016G099300 ID=Potri.016G099300.2.v4.1 annot-version=v4.1
MAETSALCLSPFSSLPSNIYRSREPNSYLSFASPFKSSASHSRSSRSIRFTCKASDSGNFLGDESLGFFPWSDGDNDIEWVREERITLFTTDGLVQIGGS
VVPRLVASSNRKRGKSKTSQRFQRFQESDYMDPNQGLCLGALFDIAATNGLDTGRRLCIFGFCRSIEMLSDVVEDTVLEHGGEVVTAEKAIKGGLHEKLT
MTVAVPYLWGVPPASETLRLAVRSGGGIVQKVYWQWDFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G36895 unknown protein Potri.016G099300
[exp]
0 1
AT2G39730 RCA rubisco activase (.1.2.3) Potri.010G200500
[exp]
3.16 0.9498
AT5G38660 APE1 acclimation of photosynthesis ... Potri.017G112700
[exp]
3.60 0.9608
AT5G61670 unknown protein Potri.012G114200
[exp]
9.59 0.9108
AT4G38970 FBA2 fructose-bisphosphate aldolase... Potri.004G162400
[exp]
14.14 0.9315
AT2G24390 AIG2-like (avirulence induced ... Potri.018G003000
[exp]
15.19 0.9186
AT1G42970 GAPB glyceraldehyde-3-phosphate deh... Potri.005G254100
[exp]
16.24 0.9387 Pt-GAPB.2
AT4G35090 CAT2 catalase 2 (.1.2) Potri.005G100400
[exp]
16.43 0.9442 CAT2
AT1G67090 RBCS1A ribulose bisphosphate carboxyl... Potri.004G100000
[exp]
17.14 0.9266
AT1G62850 Class I peptide chain release ... Potri.003G115300
[exp]
20.14 0.9085
AT2G25080 ATGPX1 glutathione peroxidase 1 (.1) Potri.018G017500
[exp]
25.09 0.9154

Potri.016G099300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.