Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	IM30.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65260 390 / 4e-136 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123600 [exp] 565 / 0 AT1G65260 424 / 1e-149 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025601 [exp] 435 / 7e-154 AT1G65260 398 / 1e-139 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1) Lus10027068 [exp] 348 / 1e-119 AT1G65260 308 / 5e-104 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF04012 [poplar] [flax] PspA_IM30 PspA/IM30 family
Representative CDS sequence Show only first row Show all	>Potri.016G099400.1 pacid=42809255 polypeptide=Potri.016G099400.1.p locus=Potri.016G099400 ID=Potri.016G099400.1.v4.1 annot-version=v4.1 ATGGCCATTAAATCACAGTTAATTACAGGATTAACCCTGCCAATGCCACACCCTCCTTATACTTCTTCAAGCTCCAACAACAACGGTAACAATAATACTA CTTTATGTATGGTGAAGAGGAGGACCCTCACGACGTCGTTTTTCAATGGTGGAGTTGAAGCTCTAAAAGTTGCTAGGATAAGGACCAGTCTATCCACTCG GTCCCAATGTTACAGACAAGGTGGAGGTGCTCTTGGCACTTGCATGAACCTTTTTGATCGGTTTGGTAGAGTTGTGAAGTCATATGCCAATGCAATCATA AGTTCCTTTGAAGATCCAGAGAAAATTCTAGAGCAGACAGTACTTGAAATGAATGATGACTTAACAAAAATGCGTCAGGCCACAGCACAAGTTCTGGCTT CTCAAAAAAGGTTGGAAAATAAATATAAAGCTGCACAACTAGCTTCTGAAGAATGGTACCGTAAGGCACAACTTGCCCTTCAAAAGGGAGAGGAAGACCT TGCACGTGAAGCTCTCAAGAGGCGTAAAACGTATGCTGATAATGCTAATTCTTTCAAAGCTCAACTTGATCAACAGAAAGGTGTCGTTGAGAATCTCGTC TCTAATACTCGGCTTCTGGAGAGCAAAATGCAGGAGGCAAAATCAAAGAAAGATACTCTGAAAGCACGTGCTCAGTCTGCAAAGACTACAACCAAAATGA ATGAAATGTTGGGAAATGTTAATACAAGTAATGCACTTGCAGCTTTTGAAAAGATGGAAGAGAAAGTAATGGCAATGGAATCAGAAGCTGAAGCTCTTGG CCAGTTGACTACAAACGAGCTTGATGGAAAGTTTGCGTTACTTGAAGGGTCATCAGTTGATGATGACCTTGAGAATCTGAAGAAGGAACTAGGTGGTAGC TCAAAGAAAGGAGAACTTCCACCAGGAAGAACAGTTGTCACCAGCTCAAACAATTCATTCCGAGATCCTGACATAGAGATGGAGCTCAATGAGTTGAGAC AAAAGAGAAAGAACTTTTAG
AA sequence Show only first row Show all	>Potri.016G099400.1 pacid=42809255 polypeptide=Potri.016G099400.1.p locus=Potri.016G099400 ID=Potri.016G099400.1.v4.1 annot-version=v4.1 MAIKSQLITGLTLPMPHPPYTSSSSNNNGNNNTTLCMVKRRTLTTSFFNGGVEALKVARIRTSLSTRSQCYRQGGGALGTCMNLFDRFGRVVKSYANAII SSFEDPEKILEQTVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQLASEEWYRKAQLALQKGEEDLAREALKRRKTYADNANSFKAQLDQQKGVVENLV SNTRLLESKMQEAKSKKDTLKARAQSAKTTTKMNEMLGNVNTSNALAAFEKMEEKVMAMESEAEALGQLTTNELDGKFALLEGSSVDDDLENLKKELGGS SKKGELPPGRTVVTSSNNSFRDPDIEMELNELRQKRKNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	0	1	IM30.2
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Potri.006G216200 [exp]	1.00	0.9809
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	3.60	0.9622
AT5G63520			unknown protein		Potri.011G010200 [exp]	4.89	0.9714
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	6.78	0.9734
					Potri.011G080900 [exp]	8.00	0.9677
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	8.36	0.9680
AT1G51110			Plastid-lipid associated prote...		Potri.001G011700 [exp]	8.48	0.9685
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	9.00	0.9731
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	10.95	0.9696	CP33.2
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	12.64	0.9560

Compare expression of checked genes

Potri.016G099400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.