Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43290 150 / 1e-43 WRKY ATWRKY49, WRKY49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) AT1G64000 95 / 3e-23 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT1G69310 96 / 8e-23 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G41570 93 / 1e-22 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT5G49520 95 / 8e-22 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT2G46130 88 / 9e-22 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT4G39410 91 / 5e-21 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G47260 91 / 7e-21 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT2G44745 89 / 7e-21 WRKY WRKY12 WRKY family transcription factor (.1) AT4G18170 90 / 2e-20 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087000 [exp] 385 / 3e-135 AT5G43290 163 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Potri.010G160100 [exp] 98 / 1e-23 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.008G094000 [exp] 96 / 6e-23 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.008G103300 [exp] 97 / 1e-22 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.007G078200 [exp] 93 / 5e-22 AT4G39410 189 / 4e-59 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.005G086400 [exp] 92 / 9e-22 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.002G059100 [exp] 94 / 1e-21 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.014G090700 [exp] 91 / 1e-21 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.010G147700 [exp] 93 / 3e-21 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024380 [exp] 174 / 8e-53 AT5G43290 157 / 7e-47 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Lus10010851 [exp] 153 / 3e-45 AT5G43290 148 / 1e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Lus10004537 [exp] 96 / 1e-22 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10037094 [exp] 95 / 4e-22 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10036891 [exp] 95 / 5e-22 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10037785 [exp] 95 / 6e-22 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004612 [exp] 93 / 2e-21 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10020832 [exp] 92 / 2e-21 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10017067 [exp] 93 / 4e-21 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036401 [exp] 90 / 4e-21 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G099900.1 pacid=42809344 polypeptide=Potri.016G099900.1.p locus=Potri.016G099900 ID=Potri.016G099900.1.v4.1 annot-version=v4.1 ATGGAAGGAGAAGTAATCAGTAGTAGTTGGTTTAGTGAGAGTGAAGAAGATGAGCTTGTGAGAGAGCTCCTTGATGATGTATCCCCTTTCTTTTTCTTGC CAGAGGAAAGAAACCAATCCAAAGCAGCAAGTCCCACTCCAAGGAATGAAGAAGCTATGAACCAGCTCATTTCCAAAGTGTATTCAGGGCCAACAAAGCA AGATATTGAGAATGCTTTGTCGATGACAAGCCGAAGAGACCAACCCCAACCAGTTTCACAAGCCAGATTCTCATTGTTGCAAAAGGGTTTGAGTAAGATT GAGAACAACAAGTACACTGTAAAACTGAAGAGCTGTGACAATGGTGTGGCTGGTGATGGTTATAAATGGAGGAAATACGGGCAGAAGTCTATCAAGAATA GCACACATCCCAGAAGCTACTACAGGTGCACGAACCGACGGTGCGGTGCAAAAAAGCAGGTGGAGAGGTCCAGCGAGGATCCAGACACGCTCGTCATCAC CTACGAAGGGCTCCATTTACACTTTTCTCACCCATATTTCTTATCGAACCAGCCACAACATGTTGATCCGCCTTCCAAGAAACCTAAGAGGACCATTTCA GAGGACGAGTTTCAAGCCCATGAAACCCGACAACCACCAGAACAAGGCCAAGAATGCTCCACACATGTGACCAGTCCTGGTTCCCTGCCTAGCTCAAGCA CAGCTGATGATTACATGCAAGAATCGGACCTGGAAGCGATGGGTCCTCGAGGGTTGCTTGAAGATGTGGTGCCTTTTATGATTCGAAACCCATCGAACTA CAATGTGTCTTCTTATTCTTCATCTTCGTCCTATCGTTCTCCCCCTACTTCACCATCTTCCTCCTTGTCTTGGTCTCCCATTCTTTCCCATTCGTGTTTC GATGTTGGCTTAAACACTAGCATTGGGTGA
AA sequence Show only first row Show all	>Potri.016G099900.1 pacid=42809344 polypeptide=Potri.016G099900.1.p locus=Potri.016G099900 ID=Potri.016G099900.1.v4.1 annot-version=v4.1 MEGEVISSSWFSESEEDELVRELLDDVSPFFFLPEERNQSKAASPTPRNEEAMNQLISKVYSGPTKQDIENALSMTSRRDQPQPVSQARFSLLQKGLSKI ENNKYTVKLKSCDNGVAGDGYKWRKYGQKSIKNSTHPRSYYRCTNRRCGAKKQVERSSEDPDTLVITYEGLHLHFSHPYFLSNQPQHVDPPSKKPKRTIS EDEFQAHETRQPPEQGQECSTHVTSPGSLPSSSTADDYMQESDLEAMGPRGLLEDVVPFMIRNPSNYNVSSYSSSSSYRSPPTSPSSSLSWSPILSHSCF DVGLNTSIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.016G099900 [exp]	0	1
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	4.24	0.8535	Pt-KCS1.1
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	6.92	0.8413
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	7.74	0.8516
					Potri.001G445425 [exp]	8.94	0.6981
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	8.94	0.8359
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	12.00	0.8401
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.002G040700 [exp]	16.24	0.8220
AT4G14940		ATAO1	amine oxidase 1 (.1)		Potri.010G088900 [exp]	20.61	0.7982
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	21.56	0.8070
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.019G093300 [exp]	22.44	0.8203	2,Pt-FLA9.2

Compare expression of checked genes

Potri.016G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.