Plant FIBer expression Database

Potri.016G100100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G087300
[exp]
311 / 7e-108 AT2G37678 57 / 2e-09 PHYTOCHROME A SIGNAL TRANSDUCTION 3, far-red elongated hypocotyl 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012123
[exp]
66 / 5e-13 AT2G37678 57 / 4e-10 PHYTOCHROME A SIGNAL TRANSDUCTION 3, far-red elongated hypocotyl 1 (.1)
Lus10010421
[exp]
61 / 2e-10 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.016G100100.3 pacid=42809189 polypeptide=Potri.016G100100.3.p locus=Potri.016G100100 ID=Potri.016G100100.3.v4.1 annot-version=v4.1
ATGTTTCTCTCTCTGCCCGACATGGATGAAGATAACGATGAGATTAACAGCTTCCAGCTTGAAGAAGCATTCAACTCCAAATGTTTTTACTTGAACAAGA
AAAGGAAGACACGGGCTGAGCAATTAGGCTTGCCCATTTCAAAACATAAATGCTTGGATCATCGTTTCCCTCTCAAAACTTCCAAAATATATGAAGAAAA
GGACTTAATCACATGCATAATCACGGGAAATGCTGAACGACAGGCCATTGATGAAGGATCAGATCCTGAATCTGCCAAAGATAGCAATAGTTTTGTTGAA
GATTCTGACTTTGCCATGTCTATAGATGGTGAAGCTAAATTTGAGATGGAGGTTTCAAAGATATGGCCACCTGACAGGCCCTCAACTTCATCATTCAGCT
GCAACAGTCTCAAGGATGCTCAATATTCTTCAGACAGTGCTGCAGCAGCACGACATGCTGGAAAAGAGGAATTGACATTTGTGAAAGGGGAGATTGATCA
ATGCGGTCATGATGATGGATTACAAGCATCTCAGAATCTTGAAGAGCCTATCCTAGAATTTGAGAGCCCTTTAGATCACAGTTGCTCTGAATTTGGAACT
GACAGCATCGAAACATGCACAGAAGCTCAGTCAGGCCCCAGAAAACCAACCATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTTATGCTGTGA
AA sequence
>Potri.016G100100.3 pacid=42809189 polypeptide=Potri.016G100100.3.p locus=Potri.016G100100 ID=Potri.016G100100.3.v4.1 annot-version=v4.1
MFLSLPDMDEDNDEINSFQLEEAFNSKCFYLNKKRKTRAEQLGLPISKHKCLDHRFPLKTSKIYEEKDLITCIITGNAERQAIDEGSDPESAKDSNSFVE
DSDFAMSIDGEAKFEMEVSKIWPPDRPSTSSFSCNSLKDAQYSSDSAAAARHAGKEELTFVKGEIDQCGHDDGLQASQNLEEPILEFESPLDHSCSEFGT
DSIETCTEAQSGPRKPTIDQEFEQYFSMLML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37678 PAT3, FRY1, FHY... PHYTOCHROME A SIGNAL TRANSDUCT... Potri.016G100100
[exp]
0 1
AT5G22920 CHY-type/CTCHY-type/RING-type ... Potri.006G121801
[exp]
3.46 0.7849
AT4G35100 SIMIP, PIP3A, P... PLASMA MEMBRANE INTRINSIC PROT... Potri.009G136600
[exp]
4.58 0.7735
AT5G59000 RING/FYVE/PHD zinc finger supe... Potri.001G246700
[exp]
4.89 0.7623
AT1G20870 HSP20-like chaperones superfam... Potri.002G005400
[exp]
10.29 0.7996
AT2G35760 Uncharacterised protein family... Potri.006G016900
[exp]
10.95 0.7432
AT5G65260 RNA-binding (RRM/RBD/RNP motif... Potri.001G311600
[exp]
19.44 0.7244
AT4G39730 Lipase/lipooxygenase, PLAT/LH2... Potri.007G091100
[exp]
22.27 0.7370
AT5G39220 alpha/beta-Hydrolases superfam... Potri.017G093500
[exp]
22.93 0.7871
AT1G17350 NADH:ubiquinone oxidoreductase... Potri.010G076600
[exp]
25.25 0.7625
AT2G20410 RNA-binding ASCH domain protei... Potri.013G045800
[exp]
29.32 0.7645

Potri.016G100100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.