Plant FIBer expression Database

Potri.016G100500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09350 474 / 6e-168 Fes1A Fes1A (.1.2.3)
AT3G53800 411 / 4e-143 Fes1B Fes1B (.1)
AT5G02150 385 / 1e-133 Fes1C Fes1C (.1.2)
AT3G51980 83 / 3e-17 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G088000
[exp]
612 / 0 AT3G09350 516 / 0.0 Fes1A (.1.2.3)
Potri.001G072200
[exp]
74 / 2e-14 AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1)
Potri.003G158701
[exp]
67 / 3e-12 AT3G51980 251 / 3e-82 ARM repeat superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003961
[exp]
514 / 0 AT3G09350 523 / 0.0 Fes1A (.1.2.3)
Lus10023786
[exp]
506 / 1e-180 AT3G09350 522 / 0.0 Fes1A (.1.2.3)
Lus10023269
[exp]
82 / 6e-17 AT3G51980 397 / 4e-137 ARM repeat superfamily protein (.1)
Lus10038535
[exp]
80 / 3e-16 AT3G51980 404 / 1e-139 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08609 Fes1 Nucleotide exchange factor Fes1
Representative CDS sequence
>Potri.016G100500.2 pacid=42809975 polypeptide=Potri.016G100500.2.p locus=Potri.016G100500 ID=Potri.016G100500.2.v4.1 annot-version=v4.1
ATGGCAAAAGAGGGACCCAACTGGGACGGATTGCTCAAGTGGAGCCTTGCCCATTCTGATGGGACTGCTCCAAATCGCAATCTCAGTGAGGAGGATAGAA
GATGGTTTACGGAAGCTATGCAATCACAGAGCGTTGATGTGATAAAGAGAATGAAGGAGATAACTCTTGTGATGCAAACCCCAGAACAAGTGTTGGAATC
TCAAGGAATTACTCCTGCTGATATTGAAGAGTTGTTGGATGAGCTGCAAGAACATGTTGAGTCCATTGACATGGCCAATGATCTTCATTCGATAGGAGGT
TTGGTCCCTCTCCTTGGTTTTCTGAAGAACACCCATGCTAGTGTTCGAGCAAAGGCTGCTGAAGTTGTAACCACCATTGTCCAGAACAACCCTAGGAGTC
AGCAAATGGTTATGGAAGCAAATGGTTTTGAGCCTCTGCTTTCTAATTTCACTTCAGATCCTGATGTGACTGTAAGAACCAAAGCGCTAGGTGCAATATC
ATCTTTAGTCCGACATAACAAACCAGGTATTGCTGCCTTTCATCTAGGAAATGGTTTTGCAGCTCTGAGAGATGCCCTGGGTTCTGAGAATGTGAGATTT
CAAAGGAAAGCATTGAACTTGATCCACTACCTACTGCATGAGAATAGTTCAGATTGCAGCATAGTCAGCCAGCTGGGATTCCCACGCATAATGTCGCACC
TTGCCTCAAGTGAAGATGCAGAAGTACGAGAAGCTGCCCTTCGTGGCCTTCTTGAACTTGCTCGAAACAAAATAGATGGGAACACTGGTAGATTAGGTGA
GGATGATGAAAAATTGAAGCAACTCCTTGAAGAACGGATTAATGGTATCAGCCTGATGTCACCTGATGAGCTTGGGGCAGCTATGGAGGAAAAACAGCTT
GTCGACACCCTCTGGGACACTTGCTACAATGAACCATCATCTCTACATGATAAGGGGCTTCTTGTACTCCCTGGAGAAGATTCACCTCCTCCTGATGTTG
CCAGCAAGCATTTTGAACCTCCCCTCAGAGCTCGGGCTGCTAGACCTGATGCTAATAAAAATTCCAGTACTGAAAATAAACAAACCCCCTTATTATTAGG
ATTGGGTCCTGCACCAGAGGCTGCAAATGTCCAAGGGACCTCTAGTGGTGAAGTCAATGCTGATGAACCACAGAACACCTCTACATAA
AA sequence
>Potri.016G100500.2 pacid=42809975 polypeptide=Potri.016G100500.2.p locus=Potri.016G100500 ID=Potri.016G100500.2.v4.1 annot-version=v4.1
MAKEGPNWDGLLKWSLAHSDGTAPNRNLSEEDRRWFTEAMQSQSVDVIKRMKEITLVMQTPEQVLESQGITPADIEELLDELQEHVESIDMANDLHSIGG
LVPLLGFLKNTHASVRAKAAEVVTTIVQNNPRSQQMVMEANGFEPLLSNFTSDPDVTVRTKALGAISSLVRHNKPGIAAFHLGNGFAALRDALGSENVRF
QRKALNLIHYLLHENSSDCSIVSQLGFPRIMSHLASSEDAEVREAALRGLLELARNKIDGNTGRLGEDDEKLKQLLEERINGISLMSPDELGAAMEEKQL
VDTLWDTCYNEPSSLHDKGLLVLPGEDSPPPDVASKHFEPPLRARAARPDANKNSSTENKQTPLLLGLGPAPEAANVQGTSSGEVNADEPQNTST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09350 Fes1A Fes1A (.1.2.3) Potri.016G100500
[exp]
0 1
AT4G22740 glycine-rich protein (.1.2) Potri.001G117400
[exp]
1.00 0.9187
AT1G07640 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-bindi... Potri.011G047500
[exp]
6.32 0.8556
AT1G24620 EF hand calcium-binding protei... Potri.008G134300
[exp]
6.70 0.8557
AT4G12640 RNA recognition motif (RRM)-co... Potri.014G171900
[exp]
8.94 0.8599
AT1G15060 Uncharacterised conserved prot... Potri.008G124400
[exp]
10.58 0.8450
AT2G04520 Nucleic acid-binding, OB-fold-... Potri.014G093801
[exp]
10.58 0.8575
AT1G55170 unknown protein Potri.003G037900
[exp]
12.16 0.8242
AT4G26270 PFK3 phosphofructokinase 3 (.1) Potri.018G069200
[exp]
16.37 0.8934
AT1G10170 ATNFXL1 NF-X-like 1 (.1) Potri.012G043700
[exp]
21.28 0.8733
AT2G26140 FTSH4 FTSH protease 4 (.1) Potri.006G227700
[exp]
22.13 0.8258 Pt-FTSH4.1

Potri.016G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.