Plant FIBer expression Database

FHY1.2 (Potri.016G100600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol FHY1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37680 354 / 1e-125 PAT3, FRY1, FHY1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003966
[exp]
382 / 5e-132 AT2G37680 375 / 4e-129 unknown protein
Lus10023781
[exp]
369 / 2e-126 AT2G37680 352 / 9e-120 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09783 Vac_ImportDeg Vacuolar import and degradation protein
Representative CDS sequence
>Potri.016G100600.1 pacid=42810041 polypeptide=Potri.016G100600.1.p locus=Potri.016G100600 ID=Potri.016G100600.1.v4.1 annot-version=v4.1
ATGCCGGTGAGAGTAGAAGAAACCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCTCCGCACCTTCTCAACTTTCAGGTGAAAATTCATCAGGACACACTT
CACCTCCAGTTTGTACTCTTTTGACTGTTGGACAGGCCTTTTCTGGAACCCAGAATGTTTCTAGTCTTCAGAAGGATGAAGCTTGGAGAGTTAATGTTCG
CATTCAAGGATGTGACCTTGATCATGGTTACCTATGTGGTACTATGGAAGCCCTTAATGTTCCTATGGCTGACACTCCCGTAGTAACTTTTTGGGAAGGA
GAAATCGTTGATGGCAAGAATTACACTTTCTTCACTGGCAAATGGGAAGCTTCGTCAGAAGATGATATAAGGCACTGGACTAAGTTTCCGTCTTTCCAAC
CATTTCTGGAAAAAGTGAAGGTTGATGGTGGCAAGTCTTTGGACTTGATTAGCTATCCGTACATATTTATGAGATGGAAAGAGCAATACTTTGTCAACGT
TGGAACAGACTGTGGGTTGACCATAGCTGGTTTTTACTATGTTTGCTTCTCTTGTACTGATGGTTCCATCAATGGCTTCTACTATGATCCTAACAGCAGC
CCGTTTCAGAAGCTTGAACTGAAATCCACTAATGAGGGAAGATCAGGTTTCAGTTTTTCATCTTATGAGTTACAGTGA
AA sequence
>Potri.016G100600.1 pacid=42810041 polypeptide=Potri.016G100600.1.p locus=Potri.016G100600 ID=Potri.016G100600.1.v4.1 annot-version=v4.1
MPVRVEETSSSSSTSSSSSAPSQLSGENSSGHTSPPVCTLLTVGQAFSGTQNVSSLQKDEAWRVNVRIQGCDLDHGYLCGTMEALNVPMADTPVVTFWEG
EIVDGKNYTFFTGKWEASSEDDIRHWTKFPSFQPFLEKVKVDGGKSLDLISYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCTDGSINGFYYDPNSS
PFQKLELKSTNEGRSGFSFSSYELQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37680 PAT3, FRY1, FHY... unknown protein Potri.016G100600
[exp]
0 1 FHY1.2
AT2G17450 RHA3A RING-H2 finger A3A (.1) Potri.007G057300
[exp]
5.74 0.6910
AT1G16330 CYCB3;1 cyclin b3;1 (.1) Potri.010G173200
[exp]
14.28 0.6463
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.005G007750
[exp]
18.24 0.6465
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Potri.003G162801
[exp]
35.19 0.6383
AT3G14470 NB-ARC domain-containing disea... Potri.018G003502
[exp]
51.14 0.6276
AT5G54940 Translation initiation factor ... Potri.010G151700
[exp]
56.12 0.5910
AT5G08290 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, m... Potri.007G072700
[exp]
61.84 0.6186
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.001G117200
[exp]
63.80 0.5861
AT1G48200 unknown protein Potri.002G084400
[exp]
138.80 0.5760
AT3G26410 TRM11, AtTRM11 tRNA modification 11, methyltr... Potri.003G022701
[exp]
157.64 0.5639

Potri.016G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.