Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LECRK7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 704 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 587 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 570 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 562 / 0 RLK receptor lectin kinase (.1) AT4G02410 554 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 552 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 528 / 4e-180 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 491 / 1e-165 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 487 / 4e-164 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 487 / 6e-164 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200600 [exp] 766 / 0 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 721 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 653 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 649 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 639 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 626 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 621 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G036300 [exp] 601 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 596 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010867 [exp] 812 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 798 / 0 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 737 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 599 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 597 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 597 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 593 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 583 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 583 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10016506 [exp] 571 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G101000.1 pacid=42810424 polypeptide=Potri.016G101000.1.p locus=Potri.016G101000 ID=Potri.016G101000.1.v4.1 annot-version=v4.1 ATGGGCTATCTTGTTGAATCTTTCTCCGCTCTTATCTTTCTCTCAATAATCCCAGTCTCAAGCCAGCTGAATGAATTCTTGTACTCCGGATTCAAAGATG CTGCCACCAACATAACCTTGAGTGGGGTTTCAGAGATTCAAAAAAATGGTATACTTCGCTTAACCAATGAAACTAGTAGATTACTGGGTCATGCTTTTTA TCCTTCTCCATTCAAGTTCAAGAACTCCAGTAATGGCACAGCTTTGTCCTTTTCCACTTGTTTTGTGTTCATTATAGTTCCCGAGTATCCAAAACTTGGA GGCCATGGTCTTGCTTTCACAATCGCAACTACAAAGGATCTAAAGGCTCTTCCAAGTCAGTATCTTGGCTTACTCAATTCAAGTGTGGTTAACTTGACAA ATCATCTTTTTGCTGTTGAATTCGACACGGTACAAGATTTTGAGTTTGGTGACATTAATGACAACCATATTGGTATTGATCTCGGCAGCTTGAAGTCTAA CGCATCCGCTTCTGCTGCATATTACACTGGTGATTCCGATTCTTCAAAGCAAGATTTAAACCTTAAGGGCGGAAAGCCAATCCAAGTTTGGATCGACTAC GATTCAGTTCAAAATGTTGTCAATGTAACTATTTCGCCTACTTCTAAGAAACCCAAAATTCCAATCTTGTCTTCTCACGTAGATCTGTCGTCTCTGTTTG AAGAATATATGTATGTGGGTTTATCTGCTTCAACAGGTTTGCTTGCTAGTTCACACTATATGCTGGGTTGGAGCTTTAAGTTAAATGGGCAAGCTCCAGC TCTGGATCTTTCTTCTTTACCTTCACTTCCAGGTGGTCACAAGAAGCAGTATACAGGTTTAGTAATCGGTGTTTCAGCTGCAGTTGTTGTGTTTGTTATC GTATCAATATCAACTGCTATTTATCTGATCAGAAAAATCAAGAATGCTGACATAGTAGAAGATTGGGAGCTGGAAATGGGGCCACATCGATATTGTTATC AAGAACTCAAGAAGGCAACTAATAATTTCAGTGACAAGGTGCTCCTTGGAAAAGGTGGTTTTGGCCAAGTTTACAAGGGGATATTACCTGATTCAAAGAT TGAAGTTGCGGTGAAGCGAATTTCTAAAGAATCAACACAAGGTTTGCGGGAGTTTGTATCAGAAATTGCTAGTATTGGTCGGCTTCGCCATCGAAATTTA GTTCAATTATTAGGTTGGTACCGCAGAAGAGATGATTTCCTTCTTGTTTATGATTATATGGCTAATGGTAGTTTAGACAAGTTCTTGTTTGAAGAGCCAA AAATGATCTTAAATTGGGAGCAGAGGTTTAAGATCATAAAGGATGTCGCTTCTGGGCTTCTCTATTTACATGAAGGCTACGAGCAAGTGGTAATTCACAG AGATGTTAAGGCCAGCAATGTTTTGCTTGATGAAGAGCTAAACGGTAGGCTTAGTGATTTTGGTCTTGCAAGATTATACGAACATGGAGCGAACCCAAAT ACGACCCGGGTTGTGGGTACATTGGGTTATCTAGCCCCAGAATTGCCAAGAACAGGAAAGGCCACAGAAAGCTCGGATGTGTATGCGTTTGGTGCACTTT TGCTTGAGGTTGTGTGTGGGCGGAGGCCTATTGAACCCAAAGCATTGCCTGAAGAACTGGTGCTGGTGGATTTGGTGTGGGAGAAGTTTAGAGAAGGGAG AGCCCTTGATGTGATAGATCCTAAGCTAAATGGTGAATATAACGAAAGCGAGGTGATGATGGTGATCAAATTGGGTCTAATGTGCTCCCATAATGCTCCA ATAGCAAGGCCTAGCATGAGGCAAGTAGTGAGGTATCTGGATGAGGAAGTCGGGATTCCTCAAAATTTGAGGGATCCAAATGGTGCATATGAAGGAGTGA AGGGTATGAGCGAGGTTTTCGATGATTTTGCACACTCCTTTGCTTCGTCCTCATTTGATAAAATGAGCACATGCTCTTTCATGGAAAATGGTGGTGGCGG TGCTAGTTTTGCCTCACTTTCTACTTCCCCGCTATCACTTCTCCGTGGCAGGGGGGAAACTGGGTAG
AA sequence Show only first row Show all	>Potri.016G101000.1 pacid=42810424 polypeptide=Potri.016G101000.1.p locus=Potri.016G101000 ID=Potri.016G101000.1.v4.1 annot-version=v4.1 MGYLVESFSALIFLSIIPVSSQLNEFLYSGFKDAATNITLSGVSEIQKNGILRLTNETSRLLGHAFYPSPFKFKNSSNGTALSFSTCFVFIIVPEYPKLG GHGLAFTIATTKDLKALPSQYLGLLNSSVVNLTNHLFAVEFDTVQDFEFGDINDNHIGIDLGSLKSNASASAAYYTGDSDSSKQDLNLKGGKPIQVWIDY DSVQNVVNVTISPTSKKPKIPILSSHVDLSSLFEEYMYVGLSASTGLLASSHYMLGWSFKLNGQAPALDLSSLPSLPGGHKKQYTGLVIGVSAAVVVFVI VSISTAIYLIRKIKNADIVEDWELEMGPHRYCYQELKKATNNFSDKVLLGKGGFGQVYKGILPDSKIEVAVKRISKESTQGLREFVSEIASIGRLRHRNL VQLLGWYRRRDDFLLVYDYMANGSLDKFLFEEPKMILNWEQRFKIIKDVASGLLYLHEGYEQVVIHRDVKASNVLLDEELNGRLSDFGLARLYEHGANPN TTRVVGTLGYLAPELPRTGKATESSDVYAFGALLLEVVCGRRPIEPKALPEELVLVDLVWEKFREGRALDVIDPKLNGEYNESEVMMVIKLGLMCSHNAP IARPSMRQVVRYLDEEVGIPQNLRDPNGAYEGVKGMSEVFDDFAHSFASSSFDKMSTCSFMENGGGGASFASLSTSPLSLLRGRGETG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	0	1	Pt-LECRK7.1
AT1G72550			tRNA synthetase beta subunit f...		Potri.013G068100 [exp]	2.82	0.7219
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	5.29	0.7255
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G061800 [exp]	8.94	0.6552	COL3.2
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	9.16	0.7242
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	11.40	0.7133
AT4G18950			Integrin-linked protein kinase...		Potri.004G064400 [exp]	15.49	0.6031
AT3G44716			unknown protein		Potri.009G148200 [exp]	17.83	0.7101
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.012G020100 [exp]	19.44	0.6094
AT3G28410			F-box/RNI-like superfamily pro...		Potri.017G146400 [exp]	20.39	0.6694
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.003G192400 [exp]	21.11	0.7243

Compare expression of checked genes

Potri.016G101000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.