Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37730 618 / 0 Protein of unknown function (DUF604) (.1) AT3G11420 450 / 1e-154 Protein of unknown function (DUF604) (.1) AT5G41460 399 / 2e-134 Protein of unknown function (DUF604) (.1) AT1G01570 380 / 1e-127 Protein of unknown function (DUF604) (.1) AT4G23490 377 / 1e-125 Protein of unknown function (DUF604) (.1) AT4G11350 366 / 9e-122 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G15240 356 / 4e-118 Protein of unknown function (DUF604) (.1) AT1G33250 347 / 9e-114 Protein of unknown function (DUF604) (.1) AT1G07850 338 / 2e-110 Protein of unknown function (DUF604) (.1) AT4G00300 338 / 7e-108 fringe-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089150 [exp] 915 / 0 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 508 / 2e-177 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 506 / 6e-177 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 392 / 6e-132 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 391 / 2e-131 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 390 / 7e-131 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 376 / 6e-126 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 370 / 8e-123 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 358 / 5e-119 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002713 [exp] 457 / 1e-157 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10024364 [exp] 405 / 2e-139 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 382 / 1e-127 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 377 / 1e-125 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 372 / 1e-123 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 368 / 3e-122 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10027153 [exp] 350 / 1e-115 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 342 / 5e-112 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10010869 [exp] 323 / 4e-108 AT2G37730 305 / 2e-101 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 329 / 6e-108 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.016G101200.1 pacid=42810048 polypeptide=Potri.016G101200.1.p locus=Potri.016G101200 ID=Potri.016G101200.1.v4.1 annot-version=v4.1 ATGCCATCTCCAATCGATCAAGACCCCTTCAAAGCCTGGAAATTCCTGGTTTTGCCAACACTAAAAGTCAGTGATATCTTCTCTTTATTCCTAAAAGCAA CTATAGCTATTTGTACCGTCGTTTCAATCTCCCTCGTCTTCTACTCCTTCCTTAATCCATCTCAACGGCTACCTTGCCCTGAATGCAATAAGATATTAGT CTCTGATCACCGGAAGATAACAAACGGTGAGGTTTCTGGTTATAGCTATGAGAAGACAAATATTTCCCACATTTTATTCGGCATTGGTGGCTCTGCAAAG ACGTGGAATAAGCGCAGACACTACACTGAGGTATGGTGGATGCCTAACATCACCCGTGGCTATGTTTGGCTCGACCAGAACCCTCCGGGGAATGACACGT GGCCATTAACCTCACCGCCGTACAAAGTCTCTGCCGATACGTCGCGGTTCAAGTACACCTGCTCGTATGGCTCTCGGTCAGCGCTACGAATTGCGAGGAT AGTCAAGGAGAGCTTTGAGTTAGGACTGGAAAATGTGAGATGGTTGGTCTTGGGAGATGATGATACAGTGTTCTTCATAGAGAATTTGGTAACGGTATTA ACAAAGTACGATCATAATCAGATGTATTACATTGGCGGCAATTCAGAGAGTGTTGAGCAAGATGCCATACATTCATATACCATGGCCTACGGTGGCGGCG GCTTTGCTATTAGTTATCCTCTAGCGAAAGAGCTCGTTAGGGTTTTGGATGGCTGCCTTGATCGATATGCATCGTTTTACGGTTCCGATCAGAAAGTTCA GGGTTGCATAAGTGAGATTGGGGTTCCTCTTACTAAAGAGCTTGGATTCCATCAGGTTGATATAAGAGGAGATCCATATGGTTTACTAGCAGCGCACCCA TTGGCGCCATTGGTGTCCTTGCACCATCTAGACTACGTCCAGTCAATATTTCCAGGGCTGAGCCGCTTTGACTCTGTCAACAAGTTAATCACAGCTTATA AAACGGATCCGGGTCGGACTTTACAATATAGTTTCTGCTACGATTTGACGCGTAATTGGTCTGTTTCAGCATCTTGGGGTTACACCATACAGTTGTATCC TGCTCTACTGACGGCAATGCAGCTACAAACAGTGTTTAGAACGTTTCAAACATGGAGGAGATGGGGCGAAGGGCCGTTCACATTTAACACCCGACCCATG AATCAACACCCGTGTCTAAGACCGGTTGTTTATTTCTTGGATCGGGTTGAAAGAGTCGGGGATGGCACCTTGACAACGTATAAAAGGTCCGAGGATGAGT TAGATAAAGTTTGCGATCGGCCTGATTATGCTCCCGTTTATGCCGTCCAGTTAGTCAATGTCATAACATCCACATCATTGAAACCTGACATTTGGAATAT GGCACCACGTAGACAGTGCTGTGAGGTAATCAATGGAGAAAACAGGATGAGCAGCATGGTGCAGGTCAACATCAGAGGGTGCAATGAGATGGAGAGCGTC ACTCCTCCATAA
AA sequence Show only first row Show all	>Potri.016G101200.1 pacid=42810048 polypeptide=Potri.016G101200.1.p locus=Potri.016G101200 ID=Potri.016G101200.1.v4.1 annot-version=v4.1 MPSPIDQDPFKAWKFLVLPTLKVSDIFSLFLKATIAICTVVSISLVFYSFLNPSQRLPCPECNKILVSDHRKITNGEVSGYSYEKTNISHILFGIGGSAK TWNKRRHYTEVWWMPNITRGYVWLDQNPPGNDTWPLTSPPYKVSADTSRFKYTCSYGSRSALRIARIVKESFELGLENVRWLVLGDDDTVFFIENLVTVL TKYDHNQMYYIGGNSESVEQDAIHSYTMAYGGGGFAISYPLAKELVRVLDGCLDRYASFYGSDQKVQGCISEIGVPLTKELGFHQVDIRGDPYGLLAAHP LAPLVSLHHLDYVQSIFPGLSRFDSVNKLITAYKTDPGRTLQYSFCYDLTRNWSVSASWGYTIQLYPALLTAMQLQTVFRTFQTWRRWGEGPFTFNTRPM NQHPCLRPVVYFLDRVERVGDGTLTTYKRSEDELDKVCDRPDYAPVYAVQLVNVITSTSLKPDIWNMAPRRQCCEVINGENRMSSMVQVNIRGCNEMESV TPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37730			Protein of unknown function (D...		Potri.016G101200 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G031300 [exp]	2.00	0.8755
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	2.00	0.8727
					Potri.003G105450 [exp]	3.16	0.8289
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	4.24	0.8357
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.016G065000 [exp]	4.69	0.8244
AT3G11760			unknown protein		Potri.008G015700 [exp]	4.89	0.8502
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	7.48	0.8357
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	8.36	0.8392
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G006800 [exp]	9.48	0.8323
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025700 [exp]	9.53	0.8221

Compare expression of checked genes

Potri.016G101200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.