Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 275 / 7e-92 ATOMT1 O-methyltransferase 1 (.1) AT1G33030 273 / 3e-91 O-methyltransferase family protein (.1) AT1G77520 231 / 4e-74 O-methyltransferase family protein (.1) AT1G63140 199 / 5e-62 O-methyltransferase family protein (.1.2) AT1G77530 199 / 1e-61 O-methyltransferase family protein (.1) AT1G51990 197 / 3e-61 O-methyltransferase family protein (.1.2) AT5G53810 196 / 1e-60 O-methyltransferase family protein (.1) AT1G21100 187 / 4e-57 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21130 184 / 3e-56 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21110 184 / 5e-56 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G150500 [exp] 479 / 4e-172 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 359 / 1e-124 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 269 / 2e-89 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 265 / 7e-88 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 255 / 7e-84 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 254 / 9e-84 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 254 / 9e-84 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 254 / 9e-84 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 254 / 2e-83 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009442 [exp] 264 / 2e-87 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10032929 [exp] 264 / 3e-87 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 261 / 2e-86 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 242 / 1e-78 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 239 / 1e-77 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10006146 [exp] 232 / 5e-75 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10002669 [exp] 229 / 6e-74 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10014825 [exp] 217 / 3e-69 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10014400 [exp] 182 / 2e-55 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 178 / 7e-54 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.016G101600.2 pacid=42810503 polypeptide=Potri.016G101600.2.p locus=Potri.016G101600 ID=Potri.016G101600.2.v4.1 annot-version=v4.1 ATGATTCATGACAATGTCATGATGGATATGTGGTACCACTTAAAAGACGCAGTTCTGGAAGGAGGGATTCCATTTGAAAAGGCTCACGGGATAAATTCTG CAGAATATCTAAAAAAAGATGCAAGATTTTGTGAGCTATTCAGCAGTTCCATGAAAAGTTTCAACGTTACATTTATGGAGACAATTCTGGACATATATGA TGGATTTGAAGGTGTAAAATGCTTGGTGGATGTGGGTGGTGGCAATGGTTCTATCCTTAACATGATCATTACCAAGTACCCTGCAATTAAGGGTATCAAC TATGATTTGGCTTCAGTTGTGGAAAGCTCACCATCCTACCCAGGAATTGAGCATGTCGCGGGGGACGGATTCGTAACAATTCCGAAAGGAGGAGATGCCA TTTTCATGAAGTGGATAACTCACAACTGGGACGATGAGCACTTGCTAAAACTGCTAAAGAATTGTTATGAAGCTTTACCAGACAACGGAAAAGTTATAGT AGTGGATATGGTAGTTCCAGAAACCCCTGAAACCAATGTTAAAGCTAAAAGCATGCTACAGAATTATTTGTTCATGTCAAGCATGAGTCCACAAGGAAAA GAAAGGACAGAAAAAGAATTTGAAACCTTGGGAAAGGAAGCTGGATTTTCTCATATTCGAGTTGCTTGTTTTGTTTGTAATTTTTCAGTAGTGGAGTTCA TAAAAAAATTAGTGAATAATTACTGTTGTAGTTACATCAGCTTACCCAATTGCCCATGTGGTTGCATTTCAGAAGCTGATGATCAATTCTCATAG
AA sequence Show only first row Show all	>Potri.016G101600.2 pacid=42810503 polypeptide=Potri.016G101600.2.p locus=Potri.016G101600 ID=Potri.016G101600.2.v4.1 annot-version=v4.1 MIHDNVMMDMWYHLKDAVLEGGIPFEKAHGINSAEYLKKDARFCELFSSSMKSFNVTFMETILDIYDGFEGVKCLVDVGGGNGSILNMIITKYPAIKGIN YDLASVVESSPSYPGIEHVAGDGFVTIPKGGDAIFMKWITHNWDDEHLLKLLKNCYEALPDNGKVIVVDMVVPETPETNVKAKSMLQNYLFMSSMSPQGK ERTEKEFETLGKEAGFSHIRVACFVCNFSVVEFIKKLVNNYCCSYISLPNCPCGCISEADDQFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.011G150500 [exp]	3.16	0.9906	COMTL1,Pt-RCOMT1.4
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.011G063000 [exp]	8.60	0.9897
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093700 [exp]	10.24	0.9875	PR3.2
					Potri.010G075100 [exp]	12.36	0.9851
AT5G37980			Zinc-binding dehydrogenase fam...		Potri.017G005400 [exp]	12.60	0.9885
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Potri.018G147501 [exp]	15.87	0.9543
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412400 [exp]	16.97	0.9876
AT2G42350			RING/U-box superfamily protein...		Potri.011G063100 [exp]	16.97	0.9819
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.011G063050 [exp]	17.54	0.9843
AT3G16510			Calcium-dependent lipid-bindin...		Potri.008G209800 [exp]	18.11	0.9855	SRC2.4

Compare expression of checked genes

Potri.016G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.