Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) AT4G00340 315 / 2e-95 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 309 / 6e-93 SD2-5 S-domain-2 5 (.1) AT4G21390 293 / 1e-86 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 277 / 6e-81 ARK3 receptor kinase 3 (.1) AT1G61390 275 / 2e-80 S-locus lectin protein kinase family protein (.1.2) AT1G65790 275 / 3e-80 ARK1 receptor kinase 1 (.1) AT1G61370 273 / 9e-80 S-locus lectin protein kinase family protein (.1) AT1G61380 265 / 9e-77 SD1-29 S-domain-1 29 (.1) AT1G11300 271 / 1e-76 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102900 [exp] 1561 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.016G102500 [exp] 1543 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 1535 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 1340 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 677 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 671 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096400 [exp] 665 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G096000 [exp] 580 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.T085100 [exp] 385 / 8e-122 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 1056 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 1016 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 1016 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 610 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 377 / 5e-118 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10013252 [exp] 374 / 1e-117 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10029802 [exp] 360 / 4e-112 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031805 [exp] 344 / 4e-106 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 343 / 1e-105 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 338 / 8e-104 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.016G102600.1 pacid=42809520 polypeptide=Potri.016G102600.1.p locus=Potri.016G102600 ID=Potri.016G102600.1.v4.1 annot-version=v4.1 ATGAGGAGTTCTCAAACTTCAATCCCTCCAAAAAAAAATTGTTTCCTCACTGTTTTGTTCTTGTTTCTTTCAACTTCAAGTGCCCAGAACGTTTTGCGAA GAGGTTCATCTCTATCAGTAGAAGATGATTCAGACATCCTTACCTCACCAGATAAAACATTCTCTTGTGGATTCTATGGGACGGGACAAAATGCTTATTG GTTCTCTATTTGGTTCACCAATTCCAAGGACAGGACTGTGGTTTGGATGGCCAACAGAGACAGACCTGCCAATGGCCGAGGTTCAAGAGTTTCTCTACGA CGAGACGGTGCAATGGTCTTGACAGATGTTGATGGCTCCATCATATGGGAGACTAACACCACCTCCACTGATGTTGGAAGAGCAGAGCTTCTGGACACTG GTAACCTTGTTCTTAAAGACCCTGGTGGTAAGATTCTATGGCAAAGCTTTGATTTTCCTACTGATACACTTCTTCCAAACCAGTTATTTACAAAGAGGAC AAAGCTGGTTGCTAGATTGCATAGCGGGTCTTATGCCTCTGGATATTTTAGTTTCTTTTTTGATAATGATAATGTGCTGAGGTTGATATATGATGGTCCT GATATTTCAAGCATATACTGGCCTAATCCTGATTTTGATGTGTTCAGAAATGGTAGAACAAATTATAATAGCAGCAGAACTGCAGTTTTCGATGAAATGG GCCATTTTATATCTAGTGATCAGCTCCAGTTCAGCGCTCCTGACACGGATTTATTAAGGATCAAAAGGAGGCTGACAATGGACCATGATGGGAATCTCAG GCTTTATAGCCTGAACAATGAAACTGGATTGTGGGTGATATCATGGCAAGCTCTTTCTCAGCTTTGTAATGTTCATGGAATTTGTGGGATAAACTCGATT TGTGTAAATACACCAGACCCCAAGTGTTCATGCCCACCTGGCTATGAGATCACTGAGCCTGGTAATTGGAATAAAGGCTGCAAGCCTATGTTCAACAGCA CTCTTTCACAGTCTCAGCAAGTGAAGTTTGTGCTGTTGCCCCATGTAGATTTCTGGGGATTTGATCTTAATTTCAGTGCATCCACTACATTCGACTCCTG CATGAAGCTCTGCTTGGGGGATTATCGGTGTAAAGCATTTAGCTATAGGCTAGATGGGGGAGGACGTTGCTTCACAAAAGGCGTGCTTTTCAATGGTTAC CAGTCCCCAAGTTTTCCAGGCAATATATATCTGAGATTGCCAGTTAGTTTTGAGACATCTCAACTAGGTATTCTTAATGGCACTGACCTCATTTGCCAGT CTGCTGAATCAGAAACAACGATCGGTTCTCCTTCTATGTATAACTTCAACACTAAGAGGACGAGATGGGTTTATTTCTACTCATTTGCTTCTGCCATTGG ATTTATTGAAATTCTCTTTGTAGTTTCAGGTTGGTGGTTTCTTTTCAGAAAGCGTGGTTCGCCAAATTTGGCGGAAGACGGATATCATCTGGTATTAAGT CCATTTAGGAGGTTTACTTACACTGAGCTCAAGAAGGCGACGAATAACTTCAAGGAAGAGCTGGGAAGGGGAGGTTCTGGAGCCGTGTATAAGGGCATTT TGACAGATGAAAGGGTTGTAGCTGTGAAGAGACTGGAAAACATGTACCAAGGGGAAGATGTATTTTGGGCAGAAGTGAGCACAATTGGAAAAATCAATCA CATGAACCTGGTGAGAATGTGGGGATTCTGTTCAGAGGGCAAACACAGACTCCTAGTCTATGAGTACATGGAATATCAATCACTGGACAAGCATCTATTC TCCCCAACGTTTCTTGAATGGAAAGACAGGTTTAAAGCGGCCTTAGGTATAGCTAAGGGTTTGGCTTATCTTCATCACGAGTGTTTAGAATGGGTCATGC ATTGTGATGTCAAGCCAGGAAATATTCTTTTGGACAGTGAATTTGAACCTAAGATTGCAGATTTTGGGCTTGCCAAGTTGTCTCAGAGGGGTGATAATAG CTCCGACTTCTCTCAGATTCGAGGAACCAAGGGATACATGGCTCCAGAGTGGGCTACAAATCTTCCTATCACTGCAAAAGTTGATGTTTATAGTTATGGA GTTGTGGTTCTAGAGATAGTGAAAGGAATCCCACTCTCAAACTGGGTGATAGAGGGCAGGGAAGAGCATGATGAATCAGATCTAACAAGGTTTGTCAGAG TGGTGAAAAGGAAAATTCAGTGCGGAGAGACCTCTTGGATAGAAGAAATAGTGGATCCAAGATTGAACGGTCAGTTTAGCAGGAGCCAAGCAACAACGAT TGTTGAACTTGGCATGTCTTGTGTAGAGGAAGATAGAAACAAGAGACCAACAATGGATTCGGTAGTCCAAGCTCTATTAGAATGTCTAGATGAATCTTAG
AA sequence Show only first row Show all	>Potri.016G102600.1 pacid=42809520 polypeptide=Potri.016G102600.1.p locus=Potri.016G102600 ID=Potri.016G102600.1.v4.1 annot-version=v4.1 MRSSQTSIPPKKNCFLTVLFLFLSTSSAQNVLRRGSSLSVEDDSDILTSPDKTFSCGFYGTGQNAYWFSIWFTNSKDRTVVWMANRDRPANGRGSRVSLR RDGAMVLTDVDGSIIWETNTTSTDVGRAELLDTGNLVLKDPGGKILWQSFDFPTDTLLPNQLFTKRTKLVARLHSGSYASGYFSFFFDNDNVLRLIYDGP DISSIYWPNPDFDVFRNGRTNYNSSRTAVFDEMGHFISSDQLQFSAPDTDLLRIKRRLTMDHDGNLRLYSLNNETGLWVISWQALSQLCNVHGICGINSI CVNTPDPKCSCPPGYEITEPGNWNKGCKPMFNSTLSQSQQVKFVLLPHVDFWGFDLNFSASTTFDSCMKLCLGDYRCKAFSYRLDGGGRCFTKGVLFNGY QSPSFPGNIYLRLPVSFETSQLGILNGTDLICQSAESETTIGSPSMYNFNTKRTRWVYFYSFASAIGFIEILFVVSGWWFLFRKRGSPNLAEDGYHLVLS PFRRFTYTELKKATNNFKEELGRGGSGAVYKGILTDERVVAVKRLENMYQGEDVFWAEVSTIGKINHMNLVRMWGFCSEGKHRLLVYEYMEYQSLDKHLF SPTFLEWKDRFKAALGIAKGLAYLHHECLEWVMHCDVKPGNILLDSEFEPKIADFGLAKLSQRGDNSSDFSQIRGTKGYMAPEWATNLPITAKVDVYSYG VVVLEIVKGIPLSNWVIEGREEHDESDLTRFVRVVKRKIQCGETSWIEEIVDPRLNGQFSRSQATTIVELGMSCVEEDRNKRPTMDSVVQALLECLDES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.016G102600 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.016G102900 [exp]	1.00	0.9770
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.004G057900 [exp]	2.44	0.9590
AT1G34300			lectin protein kinase family p...		Potri.016G102500 [exp]	3.74	0.9394
AT5G17450		HIPP21	heavy metal associated isopren...		Potri.017G123400 [exp]	4.00	0.9550
AT5G01950			Leucine-rich repeat protein ki...		Potri.006G111100 [exp]	7.21	0.9308
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.006G247700 [exp]	10.09	0.9475	Pt-WGA3.1
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.009G075100 [exp]	10.90	0.9467
AT2G44340			VQ motif-containing protein (....		Potri.001G230800 [exp]	12.96	0.9428
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.010G185700 [exp]	13.03	0.9383
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	13.41	0.9443

Compare expression of checked genes

Potri.016G102600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.