Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 355 / 8e-110 lectin protein kinase family protein (.1) AT4G00340 313 / 5e-94 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 295 / 2e-87 SD2-5 S-domain-2 5 (.1) AT4G21390 290 / 2e-85 B120 S-locus lectin protein kinase family protein (.1) AT1G61370 274 / 1e-79 S-locus lectin protein kinase family protein (.1) AT4G21380 273 / 5e-79 ARK3 receptor kinase 3 (.1) AT1G61390 265 / 2e-76 S-locus lectin protein kinase family protein (.1.2) AT2G19130 265 / 4e-76 S-locus lectin protein kinase family protein (.1) AT1G61380 263 / 5e-76 SD1-29 S-domain-1 29 (.1) AT1G11280 261 / 6e-75 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102600 [exp] 1533 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102500 [exp] 1531 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 1529 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 1326 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 675 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 672 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096400 [exp] 661 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G096000 [exp] 581 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.010G103300 [exp] 380 / 2e-119 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 1053 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 1018 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 1015 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 612 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 372 / 1e-115 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10013252 [exp] 370 / 1e-115 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10024195 [exp] 349 / 2e-107 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10029802 [exp] 348 / 2e-107 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031230 [exp] 342 / 9e-105 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 332 / 2e-101 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.016G102700.3 pacid=42810145 polypeptide=Potri.016G102700.3.p locus=Potri.016G102700 ID=Potri.016G102700.3.v4.1 annot-version=v4.1 ATGGGGAGTTCTCAAACTTCAATCCCTCCAAAAAAAAATTGTTTCCTCACTGTTTTGTTCTTGTTTCTTTCAACTTCAAGTGCCAAGAACGTTTTGCGAA GAGGTTCATCTCTATCAGTAGAAGATGATTCGGACATCCTTATCTCACCAGATAAAACATTCTCTTGTGGATTCTATGGGATGGGACAAAATGCTTATTG GTTCTCTATTTGGTTCACCAATTCCAAGGACAGGACTGTGGTTTGGATGGCCAACAGAGACAGACCTGCTAATGGCCGAGGTTCAAGAGTTTCTCTACTA CGAGACGGTGCAATGGTCTTGACAGATGTTGATGGCTTCATCATATGGGAGACTAACACCACCTCCACTGATGTTGGAAGAGCAGAGCTTCTGGACACTG GTAACCTTGTTCTTAAAGGCCCTGGTGGTAAGGTTCTATGGCAAAGCTTTGATTTTCCTACTGATACACTTCTTCCAAACCAGTTATTTACAAAGAGGAC AAAGCTGGTTGCTAGATTGCATAGCGGGTCTTATGCCTCTGGATATTTTAGTTTCTTTTTTGATAATGATAATGTGCTGAGGTTGATATATGATGGTCCT GATATTTCAAGCATATACTGGCCTAATCCTGATTTTAATCCGTTCGGAAATGGTAGAACAAATTATAATAGCAGCAGAACTGCAGTTTTTGATGAAATGG GCCATTTTATATCTAGTGATTTGCTCCAGTTCAGTGCTCCTGACACGGGTTTATTAAGGATCAAAAGGAGGCTCACAATGGACCATGATGGGAATCTCAG GCTTTATAGCCTGAACAATGAAACTGGATTGTGGGTGATATCATGGCAAGCTCTTTCTCAGCTTTGTAATGTTCATGGAATTTGTGGGATAAACTCGATT TGTGTAAATACACCAGACCCCAAGTGTTCATGCCCACCTGGCTATGAGATCACTGAGCCTGGTAATTGGAATAAAGGCTGCAAGCCTATGTTCAACAGCG CTCTTTCACAGTCTCAGCAAGTGAAGTTTGTGCTGTTGCCCCATGTAGATTTCTGGGGATTTGATCTTAATTTCAGTGCATCCGCTACATTCGACTCCTG CATGAAGCTCTGCTTGGGGGATTATCGGTGTAAAGCATTTAGCTATAGGCTAGATGGGAGAGCACTTTGCTACACAAAAGGCGTGCTTTTCAATGGTTAC CAGTCCCCAAGTTTTCCAGGCAATATATATCTGAGATTGCCAGATAGTGTTGAGACATCTCAACTAGGTATTCTTAATGGCACTGACCTCATTTGCCAGT CTGCTGAATCAGAAACAACGATCGGTTCTCCTTCTATGTATAACTTCAACACTAAGAGGACGAGATGGGTTTATTTCTACTTTTTTGCTTCTGCCATTGG ACTTGTTGAAATTCTCTTTGTAATTTCAGGTTGGTGGTTTCTTTTCAGAAAGCGTGGTTCGCCAAATTTGGCGGAAGACGGATATCATCTGGTATTAAGT CCATTTAGGAGGTTTACTTACACTGAGCTCAAGAAGGCGACGAATAACTTCAAGGAAGAGCTGGGAAGGGGAGGTTCTGGAGCCGTGTATAAGGGCTTTT TGACAGATGAAAGGGTTGTAGCTGTGAAGAGACTGGAAAACATGAACCAAGGGGAAGATGTATTTTGGGCAGAAGTGAGCACAATTGGAAAAATCAATCA CATGAACCTGGTGAGAATGTGGGGATTCTGTTCAGAGGGCAAACACAGACTCCTAGTATACGAGTACATGGAATATCAATCACTGGACAAGCATCTATTC TCCCCAACGTTTCTTGAATGGAAAGACAGGTTTAAAGCGGCCTTAGGGATAGCTAAGGGCTTGGCTTATCTTCATCACGAGTGTTTAGAATGGGTTATAC ATTGTGATGTGAAGCCAGGAAATATTCTTTTGGACAGTGAATTTGAACCCAAGATTGCAGATTTTGGGCTTGCCAAGTTGTCTCAGAGGGGTGGTAAAAG CTCTGACTTCTCTCAGATTCGAGGAACCAAGGGTTACATGGCTCCAGAGTGGGCTACAAATCTTCCTATCACTGCAAAAGTTGATGTTTATAGTTATGGA GTTGTGGTTCTAGAGATAGTGAAAGGAATCCCACTCTCAAATTGGGTCATAGAGGGCAGGGAAGAGCATGATGAATCAGATCTAACAAGGTTTGTCAGAG TGGTGAAAAGGAAAATTCAGTGCGGAGAGACCTCTTGGATAGAAGAAATAGTGGATCCAAGATTGAATGGTCAGTTTAGCAGGAACCAAGCAACAACGAT TGTTGAACTTGGCATGTCTTGTGTAGAGGAAGATAGAAACAAGAGACCAACAATGGATTCGGTAGTCCAAGCTCTATTAGAATGTCTAGATGAATCTTAC ACCCAGCTTTTGGACAGTCGACAAGAAGATAAAGTTTGTTACCAAGTCAAGAAGTGGTCACCCACTCAACAATTAGTCATCAAATCAATAGTTCCGAATT TTGTCTTATAA
AA sequence Show only first row Show all	>Potri.016G102700.3 pacid=42810145 polypeptide=Potri.016G102700.3.p locus=Potri.016G102700 ID=Potri.016G102700.3.v4.1 annot-version=v4.1 MGSSQTSIPPKKNCFLTVLFLFLSTSSAKNVLRRGSSLSVEDDSDILISPDKTFSCGFYGMGQNAYWFSIWFTNSKDRTVVWMANRDRPANGRGSRVSLL RDGAMVLTDVDGFIIWETNTTSTDVGRAELLDTGNLVLKGPGGKVLWQSFDFPTDTLLPNQLFTKRTKLVARLHSGSYASGYFSFFFDNDNVLRLIYDGP DISSIYWPNPDFNPFGNGRTNYNSSRTAVFDEMGHFISSDLLQFSAPDTGLLRIKRRLTMDHDGNLRLYSLNNETGLWVISWQALSQLCNVHGICGINSI CVNTPDPKCSCPPGYEITEPGNWNKGCKPMFNSALSQSQQVKFVLLPHVDFWGFDLNFSASATFDSCMKLCLGDYRCKAFSYRLDGRALCYTKGVLFNGY QSPSFPGNIYLRLPDSVETSQLGILNGTDLICQSAESETTIGSPSMYNFNTKRTRWVYFYFFASAIGLVEILFVISGWWFLFRKRGSPNLAEDGYHLVLS PFRRFTYTELKKATNNFKEELGRGGSGAVYKGFLTDERVVAVKRLENMNQGEDVFWAEVSTIGKINHMNLVRMWGFCSEGKHRLLVYEYMEYQSLDKHLF SPTFLEWKDRFKAALGIAKGLAYLHHECLEWVIHCDVKPGNILLDSEFEPKIADFGLAKLSQRGGKSSDFSQIRGTKGYMAPEWATNLPITAKVDVYSYG VVVLEIVKGIPLSNWVIEGREEHDESDLTRFVRVVKRKIQCGETSWIEEIVDPRLNGQFSRNQATTIVELGMSCVEEDRNKRPTMDSVVQALLECLDESY TQLLDSRQEDKVCYQVKKWSPTQQLVIKSIVPNFVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	0	1
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	2.00	0.8824
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	3.16	0.8732
AT5G67390			unknown protein		Potri.007G053300 [exp]	3.87	0.8414
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	4.58	0.8724	Pt-CYP94.3
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.015G141200 [exp]	6.32	0.8528	Pt-EMS1.1
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	10.95	0.8671
AT1G34300			lectin protein kinase family p...		Potri.016G102500 [exp]	12.00	0.8709
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.005G234200 [exp]	13.03	0.8496
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	13.49	0.8549	Pt-AUX28.3
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	14.42	0.8387	PGIP.3

Compare expression of checked genes

Potri.016G102700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.