Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 358 / 3e-111 lectin protein kinase family protein (.1) AT4G00340 313 / 4e-94 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 302 / 3e-90 SD2-5 S-domain-2 5 (.1) AT4G21390 286 / 6e-84 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 270 / 5e-78 ARK3 receptor kinase 3 (.1) AT1G61370 264 / 3e-76 S-locus lectin protein kinase family protein (.1) AT1G61390 263 / 9e-76 S-locus lectin protein kinase family protein (.1.2) AT2G19130 262 / 2e-75 S-locus lectin protein kinase family protein (.1) AT1G61380 259 / 2e-74 SD1-29 S-domain-1 29 (.1) AT1G11300 265 / 3e-74 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102500 [exp] 1572 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 1561 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 1529 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 1334 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 674 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 666 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096400 [exp] 662 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G096000 [exp] 580 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.T085100 [exp] 379 / 3e-119 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 1054 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 1014 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 1013 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 610 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 362 / 8e-113 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10006052 [exp] 363 / 9e-113 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 351 / 2e-108 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031230 [exp] 339 / 8e-104 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 336 / 7e-103 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 335 / 2e-102 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.016G102900.1 pacid=42810361 polypeptide=Potri.016G102900.1.p locus=Potri.016G102900 ID=Potri.016G102900.1.v4.1 annot-version=v4.1 ATGATAATTGTTCTTACCAAACAACATACAAGTTTCAGGCCAATCCTGGGCCTCATGGGGAGTTCTCAAACTTCAATCCCTCCAAAAAAAAATTGTTTCC TCACTGTTTTGTTCTTGTTTCTTTCAACTTCAAGTGCCCAGAACGTTTTGCGAAGAGGTTCATCTCTATCAGTAGAAGATGATTCAGACATCCTTATCTC ACCAGATAAAACATTCTCTTGTGGATTCTATGGGATGGGACAAAATGCTTATTGGTTCTCTATTTGGTTCACCAATTCCAAGGACAGGACTGTGGTTTGG ATGGCCAACAGAGACAGACCTGCCAATGGCCGAGGTTCAAGAGTTTCTCTACGACGAGACGGTGCAATGGTCTTGACAGATGTTGATGGCTCCATCATAT GGGAGACTAACACCACCTCCACTGATGTTGGAAGAGCAGAGCTTCTGGACACTGGTAACCTTGTTCTTAAAGACCCTGGTGGTAAGATTCTATGGCAAAG CTTTGATTTTCCTACTGATACACTTCTTCCAAACCAGTTATTTACAAAGAGGACAAAGCTGGTTGCTAGATTGCATAGCGGGTCTTATGCCTCTGGATAT TTTAGTTTCTTTTTTGATAATGATAATGTGCTGAGGTTGATATATGATGGTCCTGATATTTCAAGCATATACTGGCCTAATCCTGATCCTGAATTTGATG TGTTCCGAAATGGTAGAACAAATTATAATAGCAGCAGAACTGCAGTTTTCGATGAAATGGGCCATTTTATATCTAGTGATCAGCTCCAGTTCAGCGCTCC TGACACGGGTTTATTAAGGATCAAAAGGAGGCTAACAATGGACCATGATGGGAATCTCAGGCTTTATAGCCTGAACAATGAAACTGGATTGTGGGCGATA TCATGGCAAGCTCTTTCTCAGCTTTGTAATGTTCATGGAATTTGTGGGATAAACTCGATTTGTGTAAATACACCAGACCCCAAGTGTTCATGCCCACCTG GCTATGAGATCACTGAGCCTGGTAATTGGAATAAAGGCTGCAAGCCTATGTTCAACAGCACTCTTTCACAGTCTCAGCAAGTGAAGTTTGTGCTGTTGCC CCATGTAGATTTCTGGGGATTTGATCTTAATTTCAGTGCATCCGCTACATTCGACTCCTGCATGAAGCTCTGCTTGGGGGATTATCGGTGTAAATCATTT AGCTATAGGCTATATGGGGAACGACGTTGCTTCACAAAAGGCGTGCTTTTCAATGGTTACCAGTCCCCAAGTTTTCCAGGCAATATATATCTGAGATTGC CAGTTAGTTTTGAGACATCTCAACTAGGTATTCTTAATGGCAGTGACCTCATTTGCCAGTCTGCTGAATCAGAAACAACGATCGGTTCTCCTTCTATGTA TAACTTCGACACTAAGAGGACGAGATGGGTTTATTTCTACTCATTTGCTTCTGCCATTGGACTTATTGAAATTCTCTTCGTAGTTTCAGGTTGGTGGTTT CTTTTCAGAAAGCGTGGTTCGCCAAATTTGGCGGAAGACGGATATCATCTGGTATTAAGTCCATTTAGGAGGTTTACTTACACTGAGCTCAAGAAGGCGA CGAATAACTTCAAGGAAGAGCTGGGAAGGGGAGGTTCTGGAGCCGTGTATAAGGGCATTTTGACAGATGAAAGGGTTGTAGCTGTGAAGAGACTGGAAAA CATGTACCAAGGGGAAGATGTATTTTGGGCAGAAGTGAGCACAATTGGAAAAATCAATCACATGAACCTGATGAGAATGTGGGGATTCTGTTCAGAGGGC AAACACAGACTCCTAGTCTATGAGTACATGGAATATCAATCACTGGACAAGCATCTATTCTCCCCAACGTTTCTTGAATGGAAAGACAGGTTTAAAGCGG CCTTAGGTATAGCTAAGGGTTTGGCTTATCTTCATCACGAGTGTTTAGAATGGGTCATGCATTGTGATGTGAAGCCAGGAAATATTCTTTTGGACAGTGA ATTTGAACCTAAGATTGCAGATTTTGGGCTTGCCAAGTTGTCTCAGAGGGGTGATAATAGCTCCGACTTCTCTCAGATTCGAGGAACCAAGGGTTACTTG GCTCCAGAGTGGGCTACAAATCTTCCTATCAATGCAAAAGTTGATGTTTATAGTTACGGAGTTGTGGTTCTAGAGATTGTGAAAGGAATCCCACTCTCAA ATTGGGTCATAGAGGGCAGGGAAGAGCATGATGAATCAGATCTAACAAGGTTTGTCAGAGTGGTGAAAAGGAAAATTCAGTGCGGAGAGACCTCTTGGAT AGAAGAAATAGTGGATCCAAGATTGAATGGTCAGTTTAGCAGGAACCAAGCAACAACGATTGTTGAACTTGGCATGTCTTGTGTAGAGGAAGATAGAAAC AAGAGACCAACAATGGATTCAGTAGTCCAAGCTCTATTAGAATGTCTAGATGAATCTTAA
AA sequence Show only first row Show all	>Potri.016G102900.1 pacid=42810361 polypeptide=Potri.016G102900.1.p locus=Potri.016G102900 ID=Potri.016G102900.1.v4.1 annot-version=v4.1 MIIVLTKQHTSFRPILGLMGSSQTSIPPKKNCFLTVLFLFLSTSSAQNVLRRGSSLSVEDDSDILISPDKTFSCGFYGMGQNAYWFSIWFTNSKDRTVVW MANRDRPANGRGSRVSLRRDGAMVLTDVDGSIIWETNTTSTDVGRAELLDTGNLVLKDPGGKILWQSFDFPTDTLLPNQLFTKRTKLVARLHSGSYASGY FSFFFDNDNVLRLIYDGPDISSIYWPNPDPEFDVFRNGRTNYNSSRTAVFDEMGHFISSDQLQFSAPDTGLLRIKRRLTMDHDGNLRLYSLNNETGLWAI SWQALSQLCNVHGICGINSICVNTPDPKCSCPPGYEITEPGNWNKGCKPMFNSTLSQSQQVKFVLLPHVDFWGFDLNFSASATFDSCMKLCLGDYRCKSF SYRLYGERRCFTKGVLFNGYQSPSFPGNIYLRLPVSFETSQLGILNGSDLICQSAESETTIGSPSMYNFDTKRTRWVYFYSFASAIGLIEILFVVSGWWF LFRKRGSPNLAEDGYHLVLSPFRRFTYTELKKATNNFKEELGRGGSGAVYKGILTDERVVAVKRLENMYQGEDVFWAEVSTIGKINHMNLMRMWGFCSEG KHRLLVYEYMEYQSLDKHLFSPTFLEWKDRFKAALGIAKGLAYLHHECLEWVMHCDVKPGNILLDSEFEPKIADFGLAKLSQRGDNSSDFSQIRGTKGYL APEWATNLPINAKVDVYSYGVVVLEIVKGIPLSNWVIEGREEHDESDLTRFVRVVKRKIQCGETSWIEEIVDPRLNGQFSRNQATTIVELGMSCVEEDRN KRPTMDSVVQALLECLDES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.016G102900 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.016G102600 [exp]	1.00	0.9770
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	7.93	0.9576
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	10.00	0.9557
AT3G58000			VQ motif-containing protein (....		Potri.009G024200 [exp]	10.95	0.9506
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	11.83	0.9541
AT1G61590			Protein kinase superfamily pro...		Potri.001G128500 [exp]	12.72	0.9541
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	12.84	0.9554
AT1G24440			RING/U-box superfamily protein...		Potri.012G093300 [exp]	14.14	0.9395
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.018G000900 [exp]	14.49	0.9388
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	14.69	0.9477

Compare expression of checked genes

Potri.016G102900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.