Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28470 534 / 0 Major facilitator superfamily protein (.1) AT1G69870 387 / 4e-127 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 366 / 1e-119 NRT1.6 nitrate transporter 1.6 (.1) AT1G18880 350 / 2e-113 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G62680 349 / 1e-112 Major facilitator superfamily protein (.1) AT3G47960 349 / 2e-112 Major facilitator superfamily protein (.1) AT1G52190 305 / 1e-95 Major facilitator superfamily protein (.1) AT1G69860 301 / 9e-95 Major facilitator superfamily protein (.1) AT3G16180 299 / 1e-93 Major facilitator superfamily protein (.1) AT1G68570 289 / 1e-89 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091600 [exp] 856 / 0 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 402 / 2e-133 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 396 / 5e-131 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 384 / 3e-126 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.012G071400 [exp] 377 / 6e-124 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 369 / 2e-120 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 319 / 3e-101 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 296 / 2e-92 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 295 / 5e-92 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024345 [exp] 684 / 0 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 526 / 0 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 377 / 4e-123 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 376 / 4e-123 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036705 [exp] 374 / 1e-121 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 343 / 3e-110 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 328 / 9e-105 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 301 / 4e-94 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 296 / 6e-92 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 293 / 8e-91 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.016G103200.1 pacid=42809277 polypeptide=Potri.016G103200.1.p locus=Potri.016G103200 ID=Potri.016G103200.1.v4.1 annot-version=v4.1 ATGGAGAATGTCCTTACTAAGACTTCATCTTCTTCAGCTGATAGTGATATCACTCGAGCTCCTCCTAACTCTCTTCTCCCTCCTAAAAAGGAAGCTGGAG GATGGAGATCTGTAAAATACATTCTTGGGAACGAGTCATTCGAGAAACTGGCTTCAATGGGTCTTATTGCCAACTTAACAGTGTATCTACAAACAAGATT CAACATGGATGGTATTCAGTTGGTTAATGTGTTCAATATTTGGTCTGGTTCCACCAATGTTACACCCTTGCTTGGTGCTTTCTTATCTGATACATATCTG GGAAGGTTCCGCACTCTTATCTGCGGTTCCACGGCGTCTTTCCTGGGCATGGTCGTCATGTCCCTAATTGCAGGCATTCCAAACTTAAGACCCCTCCACT GCACTGGAGGATCCAATTGCCAAAAACCCGAGTTTTGGCAGCTTGGAGTCCTCTATTTGGGTCTTGGATTGCTTGCCATTGGAGCTGGAGGTGTTAGGCC TTGCAACATTGCCTTTGGAGCTGATCAATTTGACACCAGAACTGAAAAGGGAAGAGCCCAACTAGAGAGCTTCTTCAACTGGTGGTATTTCTCTTTCACG GTGTCTCTGGTGATAGCTCTCACTGTAGTGGTCTACGTTCAGACTAATGTGAGTTGGGTTATAGGTTATGGCATACCTGCAGCCTGCTTGTTCTTCTCTA TTGTCATTTTCTTGATTGGAAAACACACTTACATAATCACAAAGCCGCAAGGAAGCGTTTTTGTTGATATGGCCAAAGTGATCGTAGCAGCCTGTAAGAA GCGTGCAATGAGTCTTGAATCAACTCCTGAAAATTCCTTCTATGATCCTCCCTGGATTGAATCAGATCAGCGTGTAACAAAGCTTGCTCACACAAATATG TTCAAGTTCTTTGACAAAGCTGCCCTAATTGCTGATCCAAGCGAATTGGATGACAAAGGTTTGCCCAAGAATTCTTGGAGATTATGTAGTGTTCAACAAG TTGAACAGCTGAAACTAGTGGTAGGACTTGTGCCAGTTTGGATTACTGGAATTGGATGCTTCATTACCATGGACCAAATGAATACTTTCGGCTTGATGCA AGCAATTCAGTCCAACAACAAAATCCACAATTTTAAAATCCCACCAGGTTGGATGGGCCTTAGTTCAATGATTTGCCTTTCAACATGGATATTCATTTAC GAGCAAATTTACCTGCCTTTCGCAAAGAAAAGGTCAAAAAAGAATGTTAGATTGACAATGAGACAGAGAATCAACACTGGTATTGTAATGGCAATCCTAT GCATGGTGGTGGCTGGAATTGTTGAGAAGAACCGCCGGGAGACAGCTTTGAAACAGGGATCTTTACTGTCACCTCAAAGTATTCTACTGCTGCTGCCACA GTTTTCCTTGTCGGGTCTGAACGAAGGATTTGCTGCTGTTGCTGTTATGGAATACTATACCAACCATTTGCCAGAGAGCATGAGGACTCTTGCCGGGGCC ATCTTCTTTCTCAGCTTCTCTGCATCCAGCTACCTCAACACGGTTATTGTCAATGTAGTCCACCATGTGACTGCTAAACTTGGGAAAACACCGTGGTTGG GTGGACGTGACCTCAATAAAGTTAAACTCGACAACTTCTACTACCTTATTGCTGGTTTAGCATTATTAAATCTTCTGTATTTCAACCTCTTTTCATGCCG CTATTTGGAGAAGAATGCTGATAAAAGACCTGGATCTAGGCACGAGGACAAGGGGTTAGAGATGAATGAAAATGTTTAA
AA sequence Show only first row Show all	>Potri.016G103200.1 pacid=42809277 polypeptide=Potri.016G103200.1.p locus=Potri.016G103200 ID=Potri.016G103200.1.v4.1 annot-version=v4.1 MENVLTKTSSSSADSDITRAPPNSLLPPKKEAGGWRSVKYILGNESFEKLASMGLIANLTVYLQTRFNMDGIQLVNVFNIWSGSTNVTPLLGAFLSDTYL GRFRTLICGSTASFLGMVVMSLIAGIPNLRPLHCTGGSNCQKPEFWQLGVLYLGLGLLAIGAGGVRPCNIAFGADQFDTRTEKGRAQLESFFNWWYFSFT VSLVIALTVVVYVQTNVSWVIGYGIPAACLFFSIVIFLIGKHTYIITKPQGSVFVDMAKVIVAACKKRAMSLESTPENSFYDPPWIESDQRVTKLAHTNM FKFFDKAALIADPSELDDKGLPKNSWRLCSVQQVEQLKLVVGLVPVWITGIGCFITMDQMNTFGLMQAIQSNNKIHNFKIPPGWMGLSSMICLSTWIFIY EQIYLPFAKKRSKKNVRLTMRQRINTGIVMAILCMVVAGIVEKNRRETALKQGSLLSPQSILLLLPQFSLSGLNEGFAAVAVMEYYTNHLPESMRTLAGA IFFLSFSASSYLNTVIVNVVHHVTAKLGKTPWLGGRDLNKVKLDNFYYLIAGLALLNLLYFNLFSCRYLEKNADKRPGSRHEDKGLEMNENV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28470			Major facilitator superfamily ...		Potri.016G103200 [exp]	0	1
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.001G001201 [exp]	75.76	0.5269
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	139.40	0.5603
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	178.02	0.5322
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Potri.010G101300 [exp]	237.69	0.5706

Compare expression of checked genes

Potri.016G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.