Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53950 801 / 0 glyoxal oxidase-related protein (.1) AT1G75620 419 / 2e-141 glyoxal oxidase-related protein (.1) AT1G19900 413 / 3e-139 glyoxal oxidase-related protein (.1) AT3G57620 399 / 1e-133 glyoxal oxidase-related protein (.1) AT1G14430 390 / 4e-130 glyoxal oxidase-related protein (.1) AT1G67290 357 / 2e-116 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 344 / 8e-112 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235500 [exp] 402 / 5e-135 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 402 / 1e-134 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 400 / 3e-134 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 399 / 1e-133 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 393 / 2e-131 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 386 / 1e-128 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 366 / 8e-121 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 365 / 1e-119 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 356 / 3e-116 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024342 [exp] 848 / 0 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 402 / 2e-134 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10015949 [exp] 399 / 3e-133 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 364 / 3e-120 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 349 / 1e-113 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 344 / 3e-112 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 346 / 2e-111 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 343 / 3e-110 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 345 / 8e-110 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 338 / 1e-108 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [poplar] [flax] Glyoxal_oxid_N Glyoxal oxidase N-terminus CL0159 [poplar] [flax] E-set PF09118 [poplar] [flax] DUF1929 Domain of unknown function (DUF1929)
Representative CDS sequence Show only first row Show all	>Potri.016G103400.1 pacid=42810379 polypeptide=Potri.016G103400.1.p locus=Potri.016G103400 ID=Potri.016G103400.1.v4.1 annot-version=v4.1 ATGGAGCTTCTAATCCTCTCAATCTTCACTTTCTTTTTCCTCTCACGTGCTGAGTTGCCCGGCACATGGGATCTCCTAGTCCCTAACGCAGGCATATCCT CCATGCACACAGCAGTTACCCGCTTCAACACTGTGGTCCTTCTAGACCGGACCAACACCGGCCCATCTCGTAAAATGCTACGAAAAGGCCACTGTCGTCT CGACCCCCACGACGCCGTTCTCAAGCGCGATTGCTATGCCCACTCCGTTCTCTTCGATCTCCAAACCAATCAAATCCGTCCACTCATGATCCTCACTGAC ACCTGGTGCTCATCAGGTCAGTTTCTCCATGATGGAACTCTCTTGCAAACAGGTGGTGATCTGGACGGGTTCAAGAAGATCCGAAAGTTCGACCCGTGTG ACATTAACGGTTCTTGCGATTGGGTCGAGCTTGATGACGTTGAATTGAGCGAGGGGAGGTGGTATGCTAGTAACCAGATACTGCCCGACGGGTCGGTGAT TATAATTGGTGGTAGAGGAGCTAATACTGTGGAGTACTATCCGCCTCGAAACGGTGCTGTGCTGTTTCCATTTCTTGCTGACGTGGAAGATAAGCAGATG GACAATTTATACCCTTACGTCCATCTCCTCCCCAACAGTAAATTATTTGTGTTTGCTAATAATAAAGCGGTTTTATTTGATCACGAGACTAATAAAGTTG TGAAAGGATTCCCACCGTTGGATGGGGGCCCAAGGAATTACCCATCCGCTGGATCATCAGTTATGTTGGCATTGGAGGGTGACTATTCGACGGCTGTGAT TGTTATTTGTGGGGGCGCCCAGTATGGCGCTTTCATTGAGAGGAGCACCGACACCCCGGCGCACGGTAGTTGTGGGCGTATTGTAGCTACATCACCCGAC CCGATTTGGGAAATGGAGGACATGCCATTCGGGCGGATCATGGGTGATATGGTAATGTTACCCACCGGTGATGCTCTAGTCATTAACGGAGCTCAAGCTG GGACCCAAGGGTTTGAGATGGCATCGAACCCGTGTTTGTATCCACTTTTATACAGACCGGGCCAACCCGTTGGGTTACGGTTCATGACATTGAATCCGGG AACTGTACCCAGACTGTACCATTCAACAGCTAACCTTTTACCAGATGGGCGTGTGTTGGTAGCAGGGAGTAACCCGCATTTTTTCTACAAATTCGAAGCT GAATTCCCGACTGAATTACGGATTGAGGCGTTTTCACCCGAATATTTGTCACCGGATCGGGCTAACCTTCGACCCGTAATAGAGGAAATACCCGATACAG TGCGTTTTGGGGAGGCTTTTGATGTGTTTGTGTCCGTTACGTTGCCTGTGGTGGGGCTTATAGAAGTAAATTTTGCAAGTGCACCCTTTGCAACACATTC CTTTTCACAAGGACAAAGATTGGTTAAATTGACGATTACACCCTCAGTTCCGGACAGCGGCAATCGGTACAAGATTGGGTGCAATGCGCCCCCTAATGGG GCGGTGGCTCCGCCAGGTTATTACATGGTTTTCGCAGTCAATCAGGGTGTGCCAAGTGTTGCACGGTGGGTGCATTTGGTGGCTTAA
AA sequence Show only first row Show all	>Potri.016G103400.1 pacid=42810379 polypeptide=Potri.016G103400.1.p locus=Potri.016G103400 ID=Potri.016G103400.1.v4.1 annot-version=v4.1 MELLILSIFTFFFLSRAELPGTWDLLVPNAGISSMHTAVTRFNTVVLLDRTNTGPSRKMLRKGHCRLDPHDAVLKRDCYAHSVLFDLQTNQIRPLMILTD TWCSSGQFLHDGTLLQTGGDLDGFKKIRKFDPCDINGSCDWVELDDVELSEGRWYASNQILPDGSVIIIGGRGANTVEYYPPRNGAVLFPFLADVEDKQM DNLYPYVHLLPNSKLFVFANNKAVLFDHETNKVVKGFPPLDGGPRNYPSAGSSVMLALEGDYSTAVIVICGGAQYGAFIERSTDTPAHGSCGRIVATSPD PIWEMEDMPFGRIMGDMVMLPTGDALVINGAQAGTQGFEMASNPCLYPLLYRPGQPVGLRFMTLNPGTVPRLYHSTANLLPDGRVLVAGSNPHFFYKFEA EFPTELRIEAFSPEYLSPDRANLRPVIEEIPDTVRFGEAFDVFVSVTLPVVGLIEVNFASAPFATHSFSQGQRLVKLTITPSVPDSGNRYKIGCNAPPNG AVAPPGYYMVFAVNQGVPSVARWVHLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53950			glyoxal oxidase-related protei...		Potri.016G103400 [exp]	0	1
AT3G59670			unknown protein		Potri.013G127100 [exp]	16.73	0.7150
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	17.66	0.7213
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	19.89	0.6941
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	42.23	0.6997
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	43.87	0.6957
					Potri.007G000801 [exp]	48.98	0.6813
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	55.96	0.6858
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	81.68	0.6868	PtEXPA4,EXPA1.2
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	105.00	0.6157
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	116.47	0.6728

Compare expression of checked genes

Potri.016G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.