Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37900 776 / 0 Major facilitator superfamily protein (.1) AT3G53960 774 / 0 Major facilitator superfamily protein (.1) AT3G54450 464 / 2e-158 Major facilitator superfamily protein (.1) AT3G54140 437 / 2e-147 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G40460 434 / 3e-146 Major facilitator superfamily protein (.1) AT5G01180 426 / 3e-143 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 419 / 5e-140 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G46050 414 / 3e-138 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 411 / 4e-137 Major facilitator superfamily protein (.1) AT1G62200 410 / 2e-136 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092000 [exp] 1038 / 0 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.008G061100 [exp] 762 / 0 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1) Potri.001G027100 [exp] 458 / 2e-155 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 455 / 2e-154 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 454 / 8e-154 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.T124706 [exp] 452 / 2e-153 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.008G170100 [exp] 450 / 2e-152 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 450 / 3e-152 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.011G120000 [exp] 442 / 4e-149 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024340 [exp] 839 / 0 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 779 / 0 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10003614 [exp] 456 / 1e-154 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 444 / 6e-150 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10030947 [exp] 439 / 1e-147 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 439 / 1e-147 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 437 / 3e-147 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10023743 [exp] 437 / 4e-147 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10000670 [exp] 436 / 9e-147 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10008232 [exp] 452 / 1e-146 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.016G103500.1 pacid=42810358 polypeptide=Potri.016G103500.1.p locus=Potri.016G103500 ID=Potri.016G103500.1.v4.1 annot-version=v4.1 ATGGAGCTTAAAAAGGGAGTAGAAACAAGAGGTGTTGATGAAGAGAAATGGGTTTATGATTCCTCAGTGGATCATAAAGGAAGGGTTCCCCTCCGGGCCT CCACTGGTGTTTGGAAAGCAACACTCTTCATCATCGTCATTGAATTCAGTGAGAGACTGAGTTACTTTGGAGTGGCGACGAGCCTCATCATTTACCTTAC CAAGGTGATTCATCAAGACCTCAAGACAGCCGCTAGGAATGTAAACTACTGGGCTGGTGTGACTACGTTGATGCCCTTATTTGGAGGCTTTCTTGCTGAT GCTTACTTCGGCCGATTCACAACTGTTTTTCTTTCGTCTGTTGTCTACCTTCTGGGCTTGATTCTCTTAACAATGTCCACGTTTGTACCAAGTCTAAAGG CTTGTGACGCAGCTGTGTGTCTGGAGCCTAGGAAGGTTCATGAAATGGTCTTCTTTATAGCCATTTACATGATCTCCATTGGAACCGGAGGGCACAAACC CTCGCTGGAGAGTTTTGGAGCTGACCAATTCGACGAGAATCACAGTGAAGAAAGAAAGAAAAAGATGTCCTATTTCAACTGGTGGAACTTTGGCCTTTGT TGTGGCCTTCTACTTGGTGTGACTGTAATTGTTTACGTGCAAGATCGTGTCGGTTGGGGTGCTGCAGATATCATTCTTGCAACAGTTATGGCTTCATCAC TAGCCATCTTCATTATAGGAAGGCCATTTTACCGCTATCATGTGCCACCTGGGAGCCCCTTAACCCCAATGTTGCAGGTCCTAGCAGCTGCCATTAAGAA GAGAAACCTGCCATATCCTTCTGATCCTGCTGAATTGCATGAAGTTCCCAAGTCACGAGTGAATAAAGGGAGGCTTCTCTGCCATACCGAAAGTCTCAAG TTTCTTGACAAAGCCGCTATAGTGGAGGATTGGGAAAATTGTGCTGAAAAGCAAGATCCTTGGACACTAGCAACCGTGACCAAGGTTGAAGAGATGAAGC TTATTCTCAATTTGATCCCAATATGGCTAGCTACGTTACCATTTGGAATCTCTGTAGCACAAACAGCCACATTCTTCGTCAAGCAAGGCACTATGTTGGA CAGAAATATTGGTAATGGCGTGGAGATCCCTCCAGCCTCAATCTTCGCGCTTTCCGCTTTTGGAATGATAGTAGCTGTGGCGATTTATGAGAAGATCCTT GTCCCAGTGTTGCGAAGGGCGACAGGAAACGAGCGAGGCATCAAAATCCTGCAGAGAATTGGCTTTGGAATGCTTTTCTCGATCTCCACAATGGTAGTTT CCGCATTGGTTGAGAGGAAGAGACTGGGTGTTGTAGAGAAGGATCCAGTGAAGGGTTCACTTTCAATGAGTGTCTTCTGGTTGGCTCCACAATTCATCAT TATCGGTGTAGGAGATGCCTTTACTCTGGTGGGCTTGCAGGAGTACTTCTATGACCAAGTTCCTGATTCTATGAGAAGCCTAGGCATTGCCTTCTACCTT AGTGTGATCGGAGCTGCAAACTTCATCAGTAGTCTTCTGATAACAACCATTGATCATGTGACTGGGAGATTTGGCAAGAGTTGGTTTGGAAAAGACTTGA ACAGTAGCCGCCTCGACTATTTTTACTGGCTTATAGCCGGCATGACCGCAGCAAACTTGATTGTATATGTGTTCTTAGCTCGGCGATACTCATACAAAAA CGTTCAGAGGAGTGTGGTTGTGGCCGACTGCTGTGAAGATGGTTTTGAAGTTTCAATGGCCTGA
AA sequence Show only first row Show all	>Potri.016G103500.1 pacid=42810358 polypeptide=Potri.016G103500.1.p locus=Potri.016G103500 ID=Potri.016G103500.1.v4.1 annot-version=v4.1 MELKKGVETRGVDEEKWVYDSSVDHKGRVPLRASTGVWKATLFIIVIEFSERLSYFGVATSLIIYLTKVIHQDLKTAARNVNYWAGVTTLMPLFGGFLAD AYFGRFTTVFLSSVVYLLGLILLTMSTFVPSLKACDAAVCLEPRKVHEMVFFIAIYMISIGTGGHKPSLESFGADQFDENHSEERKKKMSYFNWWNFGLC CGLLLGVTVIVYVQDRVGWGAADIILATVMASSLAIFIIGRPFYRYHVPPGSPLTPMLQVLAAAIKKRNLPYPSDPAELHEVPKSRVNKGRLLCHTESLK FLDKAAIVEDWENCAEKQDPWTLATVTKVEEMKLILNLIPIWLATLPFGISVAQTATFFVKQGTMLDRNIGNGVEIPPASIFALSAFGMIVAVAIYEKIL VPVLRRATGNERGIKILQRIGFGMLFSISTMVVSALVERKRLGVVEKDPVKGSLSMSVFWLAPQFIIIGVGDAFTLVGLQEYFYDQVPDSMRSLGIAFYL SVIGAANFISSLLITTIDHVTGRFGKSWFGKDLNSSRLDYFYWLIAGMTAANLIVYVFLARRYSYKNVQRSVVVADCCEDGFEVSMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37900			Major facilitator superfamily ...		Potri.016G103500 [exp]	0	1
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G031000 [exp]	2.82	0.8224
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	6.70	0.7856
AT3G12620			Protein phosphatase 2C family ...		Potri.016G082800 [exp]	7.74	0.7279
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.004G140100 [exp]	9.16	0.7862
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060300 [exp]	9.94	0.7973
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.011G148400 [exp]	13.22	0.7774
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.005G192100 [exp]	14.35	0.8042
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.003G146300 [exp]	15.96	0.7068
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.003G128000 [exp]	16.61	0.7668	Pt-GL3.2
AT4G14385			unknown protein		Potri.002G038700 [exp]	17.60	0.7701

Compare expression of checked genes

Potri.016G103500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.