Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37920 249 / 1e-81 EMB1513 embryo defective 1513, copper ion transmembrane transporters (.1) AT2G07750 92 / 5e-20 DEA(D/H)-box RNA helicase family protein (.1) AT1G63250 91 / 5e-20 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092100 [exp] 479 / 5e-171 AT2G37920 243 / 1e-79 embryo defective 1513, copper ion transmembrane transporters (.1) Potri.001G107300 [exp] 87 / 2e-18 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G124100 [exp] 79 / 5e-16 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002043 [exp] 277 / 6e-90 AT2G37920 259 / 4e-84 embryo defective 1513, copper ion transmembrane transporters (.1) Lus10024339 [exp] 250 / 2e-79 AT2G37920 245 / 8e-79 embryo defective 1513, copper ion transmembrane transporters (.1) Lus10034440 [exp] 84 / 2e-19 AT1G63250 161 / 1e-46 DEA(D/H)-box RNA helicase family protein (.1) Lus10019121 [exp] 84 / 2e-19 AT1G63250 166 / 1e-48 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G103600.1 pacid=42810413 polypeptide=Potri.016G103600.1.p locus=Potri.016G103600 ID=Potri.016G103600.1.v4.1 annot-version=v4.1 ATGTCATCTTCTCTCTCAATCCCAACGCACCTCTCTTTCTATAAAACCCTCTCATCCCAAAACCCCCTCTTCTTTCGAAAACCCTTGAGCCTCACTCTCC CTCGCAAAACCTCAATAATTCGAATGGGTGGAGGCCCAAGAACATACCCAGGAGGAGTCTCCAAGTGGCAGTGGAAACGAATGCAAAAAAACAAAGCTAA ACAACTCCTAAAGGCTAGGCTTTCTCGGGAGAGACAGATTTACGAAATGAGAAAAAGGGCAGAGCTCAAAGCTTCTGTTTCTGAATTAGAGCGTCCTTGG GAAGTTGTTCAGAAAGCACCTAAGTTGTTTTCTGTTGGTGCTGATGAACAAGTTAAGGTTTTGGCCGACCGCTTTCAGAAACCAGGAGGGTTTGATTTGT GGAGTGAAAGAGATGGACCCCAGTTGTTTGAGACCCCTGATGGGGTTCCCTCCGCCCGGTTTTTCCCTAAAGGTGTTGTACATAGTGTGAAACCTTATGG GAAGGTTTCTGCTTCTGGGTTTGGTGAATTGAGTGGTGAAATGCCGGATTCTGAATTAGAAAGCTATACTGAAAGCGAAACTGAAGCGGAAAGTGAATAT GAGAATGATGGAATGTCCGTTAATGGGAAATTAAGCAGGGAAGATGAGGATGGGTCGGTTTTAGAGAGCGCGTATGGGGAGAATCCTGATGGAAAATTGG GGATGGATAAGAGGAATGCAAAGAGAATTAATGGTAAACACAGGAAGAAGGGGAATAGGAGGAGATTTGGGAGTGGTTTTAATGCATTTGACTCAGGGCA GGTTGGTTTTGAGAAAGAGAAAAGAGTGGGGGGGATTTCCAACTTCGATGCTGGTGGTAATAATAGGAGTAAAAATGGTAGTAGGATTAGTAAGACTAGA GGTTTGCAGAATCGGAGAGATTCAAATTCTGAAGTTCACGTTATGAGCTTGCAACGGGATGGGAGTTATGGATTCCAAGTCGAGAATGAGAAGTTTGATT CTGATTCTTGGGATGTGGAGGCATTTGAGTTCGATTCGTTTTAG
AA sequence Show only first row Show all	>Potri.016G103600.1 pacid=42810413 polypeptide=Potri.016G103600.1.p locus=Potri.016G103600 ID=Potri.016G103600.1.v4.1 annot-version=v4.1 MSSSLSIPTHLSFYKTLSSQNPLFFRKPLSLTLPRKTSIIRMGGGPRTYPGGVSKWQWKRMQKNKAKQLLKARLSRERQIYEMRKRAELKASVSELERPW EVVQKAPKLFSVGADEQVKVLADRFQKPGGFDLWSERDGPQLFETPDGVPSARFFPKGVVHSVKPYGKVSASGFGELSGEMPDSELESYTESETEAESEY ENDGMSVNGKLSREDEDGSVLESAYGENPDGKLGMDKRNAKRINGKHRKKGNRRRFGSGFNAFDSGQVGFEKEKRVGGISNFDAGGNNRSKNGSRISKTR GLQNRRDSNSEVHVMSLQRDGSYGFQVENEKFDSDSWDVEAFEFDSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.016G103600 [exp]	0	1
AT5G09995			unknown protein		Potri.010G003700 [exp]	2.44	0.9759
AT4G37510			Ribonuclease III family protei...		Potri.007G053000 [exp]	5.29	0.9743
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.003G030100 [exp]	6.00	0.9752
					Potri.004G038500 [exp]	8.83	0.9537
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.016G070900 [exp]	8.83	0.9631
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.006G202000 [exp]	9.48	0.9702
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.007G060400 [exp]	11.40	0.9708
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.014G102100 [exp]	11.83	0.9690
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Potri.014G138500 [exp]	12.96	0.9574
AT3G04550			unknown protein		Potri.013G044900 [exp]	13.07	0.9666

Compare expression of checked genes

Potri.016G103600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.