Plant FIBer expression Database

Potri.016G103750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43730 54 / 3e-09 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
AT2G02650 45 / 4e-06 Ribonuclease H-like superfamily protein (.1)
AT5G18880 45 / 5e-06 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
AT4G04650 44 / 8e-06 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
AT2G02520 43 / 1e-05 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G139150
[exp]
134 / 1e-40 AT4G10613 41 / 8e-05 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Potri.011G086901
[exp]
122 / 2e-36 AT4G04650 54 / 2e-09 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Potri.005G154050
[exp]
121 / 5e-36 AT4G05095 44 / 3e-06 unknown protein
Potri.007G061250
[exp]
115 / 2e-33 AT4G04650 44 / 7e-06 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Potri.006G162650
[exp]
101 / 1e-26 ND /
Potri.010G000101
[exp]
51 / 5e-08 AT3G24255 193 / 1e-53 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Potri.004G000150
[exp]
49 / 2e-07 AT1G43730 107 / 4e-27 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13966 zf-RVT zinc-binding in reverse transcriptase
Representative CDS sequence
>Potri.016G103750.1 pacid=42810296 polypeptide=Potri.016G103750.1.p locus=Potri.016G103750 ID=Potri.016G103750.1.v4.1 annot-version=v4.1
ATGATGCATTTTCAATTAAAAAGCTCTTTTAAAAAGCATATTCTCAAAACTAAGGATAGGCTTCGGTTTGTTCAGTCTGACACTATTTGTGTTCTTTGTC
AGGAAGAAGAGGAAACTCATAGCCATCTTTTCTTTGCTTGCACTTGGACTTCCCTATTGTGGAGGATGGTGAAGACCTGGCTAAGAGTTCACAGGCATAT
GACAACCTTGAGTAGTGCCATTAGAGGCTTAAACTCTAGTAAGAACAACCTTGAAGCTAGAATGGGGAGAGTTTCCTTAGGCCTTCTGGTCTACTTAGTA
TGGGAAGAAAAAAACACGTGGATATTTGAATCAACTTGCAAGTGGATTGATCTTATTTTTCGCAAATTCCAAGTTATTTCGAGGGTAGTGTTTTTGCTAT
TGTTTGTTGCTTCTTATGGTTTGTTATGCTTTTTCTAG
AA sequence
>Potri.016G103750.1 pacid=42810296 polypeptide=Potri.016G103750.1.p locus=Potri.016G103750 ID=Potri.016G103750.1.v4.1 annot-version=v4.1
MMHFQLKSSFKKHILKTKDRLRFVQSDTICVLCQEEEETHSHLFFACTWTSLLWRMVKTWLRVHRHMTTLSSAIRGLNSSKNNLEARMGRVSLGLLVYLV
WEEKNTWIFESTCKWIDLIFRKFQVISRVVFLLLFVASYGLLCFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43730 RNA-directed DNA polymerase (r... Potri.016G103750
[exp]
0 1
AT5G20710 BGAL7 beta-galactosidase 7 (.1) Potri.018G062800
[exp]
4.00 1.0000
AT4G25760 ATGDU2 glutamine dumper 2 (.1) Potri.004G108560
[exp]
6.00 0.7541
AT5G12000 Protein kinase protein with ad... Potri.001G198300
[exp]
6.92 0.7817
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.004G092600
[exp]
7.07 0.8080
AT5G25160 C2H2ZnF ZFP3 zinc finger protein 3 (.1) Potri.003G192000
[exp]
7.54 0.4945
AT3G08690 ATUBC11, UBC11 ubiquitin-conjugating enzyme 1... Potri.008G134400
[exp]
9.16 0.7723 Pt-UBC.3
AT2G44810 DAD1 DEFECTIVE ANTHER DEHISCENCE 1,... Potri.002G137900
[exp]
10.58 0.6488
AT1G57775 Protein of unknown function (D... Potri.004G110600
[exp]
10.95 0.7233
Potri.010G154250
[exp]
12.24 0.6663
AT5G59970 Histone superfamily protein (.... Potri.002G143850
[exp]
12.48 0.6607

Potri.016G103750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.