Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02010 634 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 604 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 490 / 2e-166 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G38430 468 / 4e-158 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 432 / 3e-145 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 421 / 2e-140 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 390 / 4e-129 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT3G24620 378 / 2e-123 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G79860 374 / 5e-122 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT4G13240 374 / 5e-122 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092600 [exp] 1044 / 0 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.008G062000 [exp] 702 / 0 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 697 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.009G140100 [exp] 478 / 2e-161 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 476 / 6e-161 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 447 / 5e-151 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 446 / 1e-150 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 442 / 7e-148 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 434 / 6e-145 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021500 [exp] 786 / 0 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 783 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10040248 [exp] 621 / 0 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 620 / 0 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 620 / 0 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 613 / 0 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10025101 [exp] 456 / 9e-153 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10023983 [exp] 455 / 2e-152 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 419 / 5e-139 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 414 / 3e-137 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.016G104400.1 pacid=42809256 polypeptide=Potri.016G104400.1.p locus=Potri.016G104400 ID=Potri.016G104400.1.v4.1 annot-version=v4.1 ATGGATAGAGCTTTCACCCACCAGAAAGAAAGAGAAACAGCTCACCAACAAGACGAGCAACATTGTCATTACCGTCTCAAGCTGTGTGCGCCTGTAGTAG TGAAGCTAAGAAGCTCCAATAACCTGAAATCGTTTTCTCTATTGGGCTTCTGGGTCTCAAAATCTCTTAGAAACTTATATTGCAAAGCTAGGTTCTCAAA TGGGTGTTGCTTGAAAAGACTACAGTTTAGTGGTATGGTAGTGAACAACTCTGCTTTTTGTGATTCACCTGGGGTGGTTCTGAAAGAAGAGAAAGGAGAA ATGGAGGGTTTGATTGAGAAGAGTAATGAATGTAACAGAGAGAAAGATACGAACTTTGGTGAAAAGAAAGGTGAAGTCCAGACATTTGGCGATTTGATTG AAGACAAGGGTAGAGAAAGCAGTTCAAGTTCTGAATTTTTAACTTCTGAGAACACAGGGCATGGGGAGCATAGTCATAGCAGCTCTGAAGAGGACTCGTC TTCTCCCCGTACATTGGGTTGGCCTGTACAGAAAGATGAAGTATCTGACTGCACAAGTACCAACAGTGCAACTGATGATGAAGAAAAATCCCATTTCGAT GATAGGAAGCTGGAGAAACAAGGGTCTTCAATTTCAGAGACTGAGATGATGAAGGAAAGGTTTTCAAAGTTGCTGCTCGGAGAAGATATGTCTGGTTGTG GAAATGGGGTTTGCACAGCTTTGGCTATATCAAATGCCATTACTAATCTATGTGCTACCTTGTTCGGACAACTATGGAGGTTGGAGCCTCTAGCACCAGA GAAGAAAGCAATGTGGCGAAGAGAGATGGAATGGTTTCTTTGTGTGAGTGATCACGTTGTGGAGTTGATGCCTTCTTGGCAGACATTTCCAGATGGGAGC AAGCTCGAGGTTATGACCTGCAGGCCTAGATCGGATCTTTACATAAATCTTCCAGCTCTGCGCAAATTGGATAACATGCTTCTTGAGATATTAGATAGTT TTGACAATACTGAGTTCTGGTACATAGACCAAGGGATCCTGGCCCCTGATGCTGATGGATCAGCTTCTTTCCGAAGAACCCTGCAGCGCCAAGAAGAGAA GTGGTGGCTACCTGTGCCTAGGGTGCCTCCTGGAGGCCTCCATGAAAATTCAAGAAAGCAGTTGCAGCACAAACGTGATTCTACAAACCAAATATTGAAA GCTGCTATGGCTATCAACAGCATCACTATATCCGATATGGAAATCCCTGAATCATATATGGATGCTCTTCCAAAGAATGGAAAAGCCAGTTTAGGAGACC TCATCTATCGATGTATCTCTTCGGATCAATTTTATCCGGAATGTCTCCTTGATTGCCTAGATTTGTCTTCCGAGCTTTTAGCTATAGAACTTGCGAACCG AGTGGAAGCCTCAATCTACATGTGGCGCAAAAAGACCAACTCTAAACCTGTCAATAGTACAAATCGCTCCAGTTCAAAGTCATCCTGGGAATTGATGAAG GAGCTGATGATTGATGTAGACAAGAGGGATTTGCTTGCTGATCGAGCAGAAAGCCTCCTGCTTTGCCTGAAGCAGCGATTCCCTGGTCTTCCACAGACAA CTTTAGATATGAGCAAAATCCAATACAACAAGGATGTTGGGAAATCCATTTTGGAGAGCTACTCAAGAGTTCTAGAGAGCTTGGCATTTAATATTGTGGC ACGAATTGATGACCTGCTCTACGTGGATGATTTGACAAAACATTCGGATCATTTCTCTTCAATCTCTAAAGTCAGTGTGATTGCTCACAAAAGTGTAACA ATTCCATACTCAGTCCCAGCCTCAAACAGTCCATATAAAACAGCTTTCACCACACCAAGCTTTTCACCTGGGCAACGAATAAGCCCTGTAAAGGGAGACC GATCGCCCTTCATGACCAGTGGAAAAATTCCTCAGCATGGTTTAGGCGTGAAAAAGGTCTTGACAGATTATCTCAGTATTGATACAAAAGGCAGGGATGG TGGCATTACAATCGAGGGAACAGACAATGTGATTCGAAACACCCCAGCTTCTCAAATTGGAATTGAATCTTTTGGGTCTATATTAGAAACAATCAGCACA CCCGAGAACAGATTTTCTGATATCTGTTAA
AA sequence Show only first row Show all	>Potri.016G104400.1 pacid=42809256 polypeptide=Potri.016G104400.1.p locus=Potri.016G104400 ID=Potri.016G104400.1.v4.1 annot-version=v4.1 MDRAFTHQKERETAHQQDEQHCHYRLKLCAPVVVKLRSSNNLKSFSLLGFWVSKSLRNLYCKARFSNGCCLKRLQFSGMVVNNSAFCDSPGVVLKEEKGE MEGLIEKSNECNREKDTNFGEKKGEVQTFGDLIEDKGRESSSSSEFLTSENTGHGEHSHSSSEEDSSSPRTLGWPVQKDEVSDCTSTNSATDDEEKSHFD DRKLEKQGSSISETEMMKERFSKLLLGEDMSGCGNGVCTALAISNAITNLCATLFGQLWRLEPLAPEKKAMWRREMEWFLCVSDHVVELMPSWQTFPDGS KLEVMTCRPRSDLYINLPALRKLDNMLLEILDSFDNTEFWYIDQGILAPDADGSASFRRTLQRQEEKWWLPVPRVPPGGLHENSRKQLQHKRDSTNQILK AAMAINSITISDMEIPESYMDALPKNGKASLGDLIYRCISSDQFYPECLLDCLDLSSELLAIELANRVEASIYMWRKKTNSKPVNSTNRSSSKSSWELMK ELMIDVDKRDLLADRAESLLLCLKQRFPGLPQTTLDMSKIQYNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKHSDHFSSISKVSVIAHKSVT IPYSVPASNSPYKTAFTTPSFSPGQRISPVKGDRSPFMTSGKIPQHGLGVKKVLTDYLSIDTKGRDGGITIEGTDNVIRNTPASQIGIESFGSILETIST PENRFSDIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	0	1
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	1.00	0.9654
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	5.47	0.9217
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	6.00	0.9263
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	7.34	0.9107
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	7.74	0.9281
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	9.16	0.9170
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.013G155300 [exp]	10.67	0.9281
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	11.22	0.9134
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.003G077200 [exp]	11.66	0.8908
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	12.72	0.9032

Compare expression of checked genes

Potri.016G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.