Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37840 848 / 0 Protein kinase superfamily protein (.1.2) AT3G53930 828 / 0 Protein kinase superfamily protein (.1.2) AT3G61960 370 / 2e-119 Protein kinase superfamily protein (.1.2) AT1G49180 258 / 5e-79 protein kinase family protein (.1.2) AT2G30360 191 / 8e-54 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT1G30270 181 / 1e-49 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 174 / 2e-47 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT3G29160 172 / 2e-47 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT2G25090 174 / 3e-47 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT3G01090 174 / 6e-47 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092900 [exp] 1207 / 0 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 444 / 1e-146 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 365 / 1e-116 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G007200 [exp] 284 / 2e-90 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011600 [exp] 284 / 8e-90 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 258 / 2e-80 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.016G133900 [exp] 181 / 4e-50 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.018G019900 [exp] 179 / 4e-49 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.006G263500 [exp] 179 / 4e-49 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021493 [exp] 1003 / 0 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 998 / 0 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 363 / 4e-116 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 363 / 4e-116 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 286 / 7e-91 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 251 / 1e-75 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10009103 [exp] 192 / 5e-54 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10025245 [exp] 188 / 2e-52 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10021852 [exp] 181 / 9e-50 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 177 / 2e-48 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G104900.1 pacid=42810324 polypeptide=Potri.016G104900.1.p locus=Potri.016G104900 ID=Potri.016G104900.1.v4.1 annot-version=v4.1 ATGGCTCAGGCTACGGGGAGGAACGGCAGGGTAGTTGGAGACTACTTGGTGGGCAGGCAAATCGGGTCGGGTTCTTTCTCGGTAGTTTGGCACGCGAGAC ACCGAGTCCATGGAACCGAAGTAGCGATAAAAGAGATCGTTACGAATCGACTTAACAAGAAATTACAAGAGAGTCTCATGTCTGAAATTTTTATTTTGAA GAGGATTAACCATCCTAATATTATTCGCTTGCACGATATTATCGAGGCTCCGGGGAGAATACACATAGTATTGGAGTACTGCAAGGGTGGTGATCTTTCT ATGTATATCCAACGCCATGGGAGAGTCCCAGAAGCAATTGCTAACCATTTCATGCAACAATTAGCTGCTGGTTTGCAAATTCTCCGGGACAATAATTTGA TACACCGGGATCTTAAGCCACAGAATCTCCTCCTCTCCACAAGTGACGGTAATGCAGTTCTGAAAATTGCAGACTTTGGATTTGCCAGATCTCTACAACC TCGAGGCCTTGCAGAAACCTTGTGTGGCTCACCCCTCTACATGGCTCCAGAGATAATGCAACTTCAGAAGTATGATGCGAAGGCAGATCTCTGGAGTGTT GGTGCCATTTTATTTCAACTTGTGACAGGAAAAACCCCATTCACTGGAAACAATCAAATACAGTTGCTCCAGAACATTGTCAAATCAACTCAGTTGCAAT TTCCTTTGGATAATAAGGATTTGAGTGCTGATTGTAAAGATTTATGCCAGAAATTGTTGCGTCGCAGTCCAGTGGAACGACTTACATTTGAGGAGTTCTT TAATCACCCTTTTCTTTCTCAAAGGAAAAAAGACGAATCATTAAGTCGCAGGAGATCTTCAAGATCAGTAGATGGATTTCCTTTCTCTGAAAGCAATCTT GGAAGGAATGCTGATGACAATTCTCAGGAGGATTGTCTGCCTTTCCTTTTGGATGATGATTCTAGTGGTCTAGAGTGTAGCCCTTTTGTTTCTAAGAGGA TGTCGCCGATGAAGTCCACCTATGGATTTTCTCTTGATTCAAGAGTTGGGGGAAGGGATGCAACATCTAATGTTCTCAATGATGTGGATTTTACTTCGAG ATATGATAGTGCCAGACAGAACTTGGAAAATGCTAGTTTTAGGCCTGGTATCAATAAAGCATTGGATGAAAGTCTAAATGAACCTCCAAAATCCATCAAC CAAAGATCAGCGAACCTGAGATCAAGAGTTGTGGATTCACTGGAGTTGATAGAGCAAGATTATGTTATTGTTTCTGGACCCCCTTTGGACGTGTCATCTT CCACAGCAAGTACTTCCAAACCAAGCAATGCACAATGCAAGTCAGAGAGTCCTTCTCGAGCACCTGCCTACATAAACACTACTCCAAGTGTCCCAATGCC CATAATTAGCACTGCCAATAAAAATCTTTGCCTCTTTGGAAGCTTGGAAATCCCGAGCTCTGCTCCTGGGACTTCTGAAGGATCTGTTGATCTGGGAGAT GCTTTGGAGCAGCCATCAACTCACTGCATGACTAGGATTAAGTCATTGCAGCAGTGTGCATCTGCCATAACTGAATTAGTGCTCGAAAAGATAAAGGCAA GTAAGCTACTGGAAGCATTCTCGATCCAACTTGTCATTCTTGCAATATGGAAGCAAGCGCTTCATATCTGCCATACTCAGGCTGCGTCAGCTATTGAAGG AAGTCCAAGCCTAGAGAGCTCAAGACTGAGGAAAAGCAGCAGCAAGAAGCATGGGACACCTGATACAGAAGATTGTCCTGATGTTGGGCCAGAGAATATG TCCGCTGAGATTGAGGGGGAATTTTTACAGGAAGTTGAGCGAGCAGAGGAGCTTTCCAAGGCTATTGAACCTGGAAGTATAGTGATGCCTGATGCGATGG AGACAATATTTCAATCTGCCCTTTATCTGGGAAGAATTGGAGGGGTTGATGAACTCATGGGTGATTTGGAAAAGGCAGCATTGCTATATTCAAAAGCGGT TCGTTTGTTAGTGTTCCTTCTAGTGGAAGCACCATCCCTTATCCTCAACCCTCCATTTTCTCTCACAAACTCGGATCGGTATAGGCTCCGCCGTTACATA GACATCCTTAATAACAGGCAAAACCATTCACGGCCTCCAAGGATGGCACCTCCCAAACGCGAGGATCAACAATGCCCACCATAG
AA sequence Show only first row Show all	>Potri.016G104900.1 pacid=42810324 polypeptide=Potri.016G104900.1.p locus=Potri.016G104900 ID=Potri.016G104900.1.v4.1 annot-version=v4.1 MAQATGRNGRVVGDYLVGRQIGSGSFSVVWHARHRVHGTEVAIKEIVTNRLNKKLQESLMSEIFILKRINHPNIIRLHDIIEAPGRIHIVLEYCKGGDLS MYIQRHGRVPEAIANHFMQQLAAGLQILRDNNLIHRDLKPQNLLLSTSDGNAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSV GAILFQLVTGKTPFTGNNQIQLLQNIVKSTQLQFPLDNKDLSADCKDLCQKLLRRSPVERLTFEEFFNHPFLSQRKKDESLSRRRSSRSVDGFPFSESNL GRNADDNSQEDCLPFLLDDDSSGLECSPFVSKRMSPMKSTYGFSLDSRVGGRDATSNVLNDVDFTSRYDSARQNLENASFRPGINKALDESLNEPPKSIN QRSANLRSRVVDSLELIEQDYVIVSGPPLDVSSSTASTSKPSNAQCKSESPSRAPAYINTTPSVPMPIISTANKNLCLFGSLEIPSSAPGTSEGSVDLGD ALEQPSTHCMTRIKSLQQCASAITELVLEKIKASKLLEAFSIQLVILAIWKQALHICHTQAASAIEGSPSLESSRLRKSSSKKHGTPDTEDCPDVGPENM SAEIEGEFLQEVERAEELSKAIEPGSIVMPDAMETIFQSALYLGRIGGVDELMGDLEKAALLYSKAVRLLVFLLVEAPSLILNPPFSLTNSDRYRLRRYI DILNNRQNHSRPPRMAPPKREDQQCPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37840			Protein kinase superfamily pro...		Potri.016G104900 [exp]	0	1
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.011G079100 [exp]	2.23	0.7700	KCO2.1
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.007G106800 [exp]	7.87	0.7865	Pt-MAP3.2
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.001G416600 [exp]	17.29	0.7473
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	22.80	0.7799
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	24.18	0.6919
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.001G417000 [exp]	24.73	0.6982
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	25.41	0.7366
AT3G49490			unknown protein		Potri.012G007000 [exp]	29.03	0.7735
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.010G150000 [exp]	29.52	0.7707
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.001G151700 [exp]	34.52	0.7597

Compare expression of checked genes

Potri.016G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.