Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54000 74 / 3e-14 unknown protein AT5G59050 66 / 1e-11 unknown protein AT4G02830 54 / 3e-08 unknown protein AT2G39870 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093000 [exp] 270 / 2e-86 AT3G54000 79 / 9e-16 unknown protein Potri.010G195800 [exp] 133 / 1e-34 AT3G54000 94 / 3e-21 unknown protein Potri.008G062200 [exp] 116 / 1e-28 AT2G39870 90 / 9e-20 unknown protein Potri.005G208800 [exp] 72 / 2e-14 AT4G02830 99 / 4e-26 unknown protein Potri.002G053700 [exp] 70 / 8e-14 AT4G02830 99 / 4e-26 unknown protein Potri.009G038600 [exp] 71 / 3e-13 AT5G59050 112 / 3e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021105 [exp] 106 / 6e-25 AT3G54000 90 / 8e-20 unknown protein Lus10017206 [exp] 101 / 7e-24 AT3G54000 59 / 9e-10 unknown protein Lus10004675 [exp] 77 / 4e-15 AT2G39870 100 / 1e-23 unknown protein Lus10040247 [exp] 76 / 7e-15 AT2G39870 100 / 9e-24 unknown protein Lus10014664 [exp] 65 / 6e-12 AT4G02830 74 / 2e-16 unknown protein Lus10042573 [exp] 65 / 9e-12 AT4G02830 66 / 2e-13 unknown protein Lus10001433 [exp] 58 / 4e-09 AT5G59050 80 / 9e-17 unknown protein Lus10001626 [exp] 58 / 4e-09 AT5G59050 77 / 4e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G105000.2 pacid=42809313 polypeptide=Potri.016G105000.2.p locus=Potri.016G105000 ID=Potri.016G105000.2.v4.1 annot-version=v4.1 ATGGCAGAGAGTTTGGATAACGGTGAGTTTTGGCTGCCTCCTCAGTTTCTCTTAGACGACGATACTGTACTTATGGAAAAGAATACTGCTAATAACTTGA AGAACTGGAGTACCAAGGACGTCTTTGGCTACTCTGAAACTGAGTATGGCAAATCTTCGGTCCCATACGAGTTTCCTTATGGATTTGGTTCCTTTGGATT TTCTTCGGATCTCAGTTCTCCTGTTGAGTCTGTGGTTGGCTCTACTGAGACAGAGAGTGACGAAGAAGATTACCTGGCTGGGTTAACTCGCCAAATGGCT CACTCCACCCTTGAAGATGATTTCAAGAGAAACGACCTCCCTTGCGGCACCGAAAAGACTAAGGGTTGGGTTTTGTCTGGATCGCCTCAATCAACGCTAT GTGCAGTTGGAAGCAGGTGCGGTTGTAGACAAGGGTCTAGCCGTGGAAGCTCGAATGGGTCTTCACCTCCAGCAACTTGGGATCTGCTGTACGAGGCTGC AGGAGAAGTAGAGAGGATGAAAATGAACAACGAAGAAGGATGTTGCTTTAACAGTCAAAGTAGAGGACTATCAGGTCCACCAAGAAAACCCCCTCCAATC TCTATTCCATCGAAAAATCCCATCTCAGACGTTAGTCTCTACCAACAGCAGCAGTCCCTTGCTTACCAGAAGTTGCAGGCATCTCAACAACTGAGACGAC AAGTGATGATGCAGCAGCAGCAGCAGGGTGTTTGGGGAGGGCAAAACAACATTTTAGGGACTGGAGTATTGTTTCCTCAAAAGCCGCATCAGACCCAGCC AGTGGTCCAAAACAGAGGGAGGAATATTACTAGTGTTGGTAGAGGACCATTGGGTTTGTCTGCATCTGCTTGGCCGCCTCTACAAAACATAACACAGCAA CAGCAACATCTCCAACAGCAGAACAACAATCATGGTGGTTCGGGCATGCGGGCTGTTTTCCTTGGTAATCCTGGAGGGAAAAAAGAATGTGCTGGTACTG GGGTTTTCTTACCTCGTCAAATCGGTACCCGAACTGAATCTCGCAAGAAGCAAGGGTGTCCCACTGTTTTGCTTCCAGCGAAAGTGGTGCTGGCTCTCAA CTTGAATTTGGAAGGAATGGGTGCTCAGGCCCAGTTCCAGCCTCGTTTTAATGGAAGTTTCACAACTGACAGTGATACCGCTGCTGCAAGGCCTCGCAGC AATAACATTCTCTCTCATCAGAAACATCGCAATGGCAGGCCACAACCAGTAATGAGCAACGAAGTCAGCTTACCCTCGGAATGGACTTATTGA
AA sequence Show only first row Show all	>Potri.016G105000.2 pacid=42809313 polypeptide=Potri.016G105000.2.p locus=Potri.016G105000 ID=Potri.016G105000.2.v4.1 annot-version=v4.1 MAESLDNGEFWLPPQFLLDDDTVLMEKNTANNLKNWSTKDVFGYSETEYGKSSVPYEFPYGFGSFGFSSDLSSPVESVVGSTETESDEEDYLAGLTRQMA HSTLEDDFKRNDLPCGTEKTKGWVLSGSPQSTLCAVGSRCGCRQGSSRGSSNGSSPPATWDLLYEAAGEVERMKMNNEEGCCFNSQSRGLSGPPRKPPPI SIPSKNPISDVSLYQQQQSLAYQKLQASQQLRRQVMMQQQQQGVWGGQNNILGTGVLFPQKPHQTQPVVQNRGRNITSVGRGPLGLSASAWPPLQNITQQ QQHLQQQNNNHGGSGMRAVFLGNPGGKKECAGTGVFLPRQIGTRTESRKKQGCPTVLLPAKVVLALNLNLEGMGAQAQFQPRFNGSFTTDSDTAAARPRS NNILSHQKHRNGRPQPVMSNEVSLPSEWTY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54000			unknown protein		Potri.016G105000 [exp]	0	1
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.005G201250 [exp]	4.69	0.7518
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	8.48	0.6978
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.010G213200 [exp]	11.53	0.6625
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.017G063500 [exp]	14.07	0.6562
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145582 [exp]	15.36	0.7169
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.002G142200 [exp]	15.81	0.6188
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Potri.004G235400 [exp]	19.67	0.7295	Pt-CYP707.6
AT1G10020			Protein of unknown function (D...		Potri.009G084000 [exp]	22.22	0.6342
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.005G201200 [exp]	28.14	0.6838	EXT.13
					Potri.008G085150 [exp]	30.00	0.7099

Compare expression of checked genes

Potri.016G105000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.