Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PAS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54010 825 / 0 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT5G48570 197 / 3e-55 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 195 / 1e-54 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G21640 87 / 3e-18 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G30480 74 / 2e-14 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G55520 66 / 2e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G42580 69 / 4e-12 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G58450 63 / 2e-11 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G58620 66 / 7e-11 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT5G21990 62 / 6e-10 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033400 [exp] 195 / 8e-55 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 192 / 2e-53 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 179 / 1e-48 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 154 / 1e-39 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 79 / 2e-15 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G059200 [exp] 79 / 2e-15 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.018G100700 [exp] 77 / 2e-15 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.008G057900 [exp] 74 / 7e-15 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G178900 [exp] 75 / 8e-15 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022603 [exp] 858 / 0 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 844 / 0 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10003171 [exp] 193 / 1e-52 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 193 / 2e-52 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 184 / 1e-50 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 180 / 5e-49 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10029505 [exp] 83 / 3e-17 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035117 [exp] 72 / 1e-13 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 74 / 2e-13 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10004714 [exp] 66 / 2e-12 AT3G55520 265 / 3e-91 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.016G105100.3 pacid=42810122 polypeptide=Potri.016G105100.3.p locus=Potri.016G105100 ID=Potri.016G105100.3.v4.1 annot-version=v4.1 ATGGCTGCGGAGGACGGTACGGCGCAAGAATATGTGCCACAGAAGAAGAATAAAGAGCCTACCGAGACCGAGAAGAGGAGAAAGAAAATTGTGCCTGGAA GTTTAATGAAAGCTGAAATTAGACCAGGAGGAGGTGATGCGAGACCATCTGATGGTGATCAGGTCATATATCATTGCACTGTTAGGACATTAGCTGGAGT TGTTGTTGAGTCTACAAGATCAGAATATGGAGGCAAGGGCACTCCAATACGACAGGTTTTGGGAAAAAGCAAGATGTTATTAGGATTACTTGAAGGGCTT CCAACAATGTTGAGTGGTGAAGTTGCAATGTTCAAGATGAAACCTCAAATGCATTATTCTGAGGCGGACTGTCCAGTTTCACCTCCAAGTAGCTTTCCAA GGGATGATGAACTTCATTTTGAGATTGAGATGATAGACTTTTCGAAAGTCAAGGTTGTCAGTGATGATTTAGGAGTCATAAAGAAGGTAATAGATGAAGG GCAGGGTTGGGAGTCGCCAAGAGAACCATATGAAGTAAAAGCTTGGATTTCTGCGAAGACAGGAGATGACAAAGTAATTCTATCGCCCAAACAAGGAGAA CCTTATTTCTTTACTATTGGAAAATCTGAGGTACCTAAAGGTCTTGAGATGGGAATTGGAACTATGACACGAGAAGAGAAGGCAGTAATATATGTTACCA ATCAGTACTTGACTGAATCTCCGCTCATGTCCGTGGTAGGTCTTGAGGAAGTTCAGTTCGAAGTAGAGCTTATCCATTTCACTCAGGTGAGGGACATGCT TGGAGATGGACGCTTGATAAAGCGTCGGCTTCGTGATGGAAAAGGTGAGTTTCCTATGGATTGCCCACTTCAGGACAGTCTACTACGGGTTCATTACAAG GGTATGCTGCTTAATGAAGAAAAGACAGTCGTCATTGATACAAGAATTGATAATGATGGTCAGCCTTTGGAGTTCAGCTCTGGAGAAGGGCTTGTGCCTG AAGGTTTTGAAATGTGTGTGCGCTTAATGCTTCCTGGAGAGGTAGCTCTTGTTACTTGCCCTCCTGACTACGCATATGACAAGTTTACCAGACCGGCAAA TGTTCCTGAAGGTGCTCATATTGAATGGGAAATTGAGCTTCTTGGTTTTGAGATGCCAAAGGATTGGACTGGTTTGGACTTTCAGGGTGTAATGGATGAA GCAGAGAAGATCAGAACCACAGGAAACAGGCTTTTCAAAGAAGGAAAGTTTGAGCTTGCTAAGGCAAAATATGAGAAGGTTCTTCGAGAATTTAATCATG TTAATCCACAAGATGACGAGGAAGGGAAAGTTTTCCTGAATACAAGAAATTTGTTAAATCTAAATGTCGCTGCATGCCACCTCAAATTAGGGGAATGCAG AAAGTCCATTGAGACATGCAATAAGGTTCTGGAAGCAAATCCTGCACACGTCAAGGCCCTTTATCGCCGTGGAATGGCCTACATGGAAGTTGGAGATTTT GAGGAAGCAAGAAGTGATTTTGAAATGATGTTGAAAGTCGACAAATCATCTGAACTTGATGCAACAGCAGCTCTTAAAAAACTGAAGCAGAAGCAGCAGG ATGTCGAGAAGAAGGCACGGAGACAATTTAAAGGACTATTTGACAAGAAGCCAGGGGAAATTGCAGATGCTGGAACTGACGACAGAGGAGAAGAGCAGAG TACAAGTGAAAATCAGAAGAATGGTGATCAGGAGGATTCAAATGGGACTGACACAGAGGATGTTGAAGATGTGGCCGATGAACCTAGAGAAGGATTGTTC TCCCGCTTGTGGCCAACTGGTAGAAGATTGTTTTCAGCTCTCGGGCTTCAAAGATGTGCGATATTGTGA
AA sequence Show only first row Show all	>Potri.016G105100.3 pacid=42810122 polypeptide=Potri.016G105100.3.p locus=Potri.016G105100 ID=Potri.016G105100.3.v4.1 annot-version=v4.1 MAAEDGTAQEYVPQKKNKEPTETEKRRKKIVPGSLMKAEIRPGGGDARPSDGDQVIYHCTVRTLAGVVVESTRSEYGGKGTPIRQVLGKSKMLLGLLEGL PTMLSGEVAMFKMKPQMHYSEADCPVSPPSSFPRDDELHFEIEMIDFSKVKVVSDDLGVIKKVIDEGQGWESPREPYEVKAWISAKTGDDKVILSPKQGE PYFFTIGKSEVPKGLEMGIGTMTREEKAVIYVTNQYLTESPLMSVVGLEEVQFEVELIHFTQVRDMLGDGRLIKRRLRDGKGEFPMDCPLQDSLLRVHYK GMLLNEEKTVVIDTRIDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEVALVTCPPDYAYDKFTRPANVPEGAHIEWEIELLGFEMPKDWTGLDFQGVMDE AEKIRTTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFLNTRNLLNLNVAACHLKLGECRKSIETCNKVLEANPAHVKALYRRGMAYMEVGDF EEARSDFEMMLKVDKSSELDATAALKKLKQKQQDVEKKARRQFKGLFDKKPGEIADAGTDDRGEEQSTSENQKNGDQEDSNGTDTEDVEDVADEPREGLF SRLWPTGRRLFSALGLQRCAIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Potri.016G105100 [exp]	0	1	Pt-PAS1.2
					Potri.001G060300 [exp]	22.80	0.5712
AT1G63810			unknown protein		Potri.007G024600 [exp]	22.91	0.6095
AT2G41480			Peroxidase superfamily protein...		Potri.018G131600 [exp]	22.93	0.6242
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	36.33	0.5781	Pt-XPO1.1
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G028200 [exp]	84.49	0.5514
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	93.33	0.5498
AT5G37590			Tetratricopeptide repeat (TPR)...		Potri.004G085200 [exp]	102.49	0.5385
AT3G52890		KIPK	KCBP-interacting protein kinas...		Potri.006G114900 [exp]	133.22	0.5132
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.012G020100 [exp]	150.43	0.5029
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	150.51	0.5220

Compare expression of checked genes

Potri.016G105100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.