Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 326 / 9e-107 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 320 / 2e-104 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 316 / 9e-103 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 316 / 1e-102 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22370 315 / 2e-102 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 310 / 1e-100 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT3G46680 240 / 5e-74 UDP-Glycosyltransferase superfamily protein (.1) AT3G46720 239 / 1e-73 UDP-Glycosyltransferase superfamily protein (.1) AT3G46650 236 / 1e-72 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 235 / 7e-72 UGT76C2 UDP-glucosyl transferase 76C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105400 [exp] 962 / 0 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.008G062400 [exp] 474 / 8e-165 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.002G098400 [exp] 355 / 5e-118 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 341 / 1e-112 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 338 / 2e-111 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 336 / 1e-110 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021000 [exp] 335 / 4e-110 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 332 / 3e-109 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 328 / 2e-107 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017201 [exp] 505 / 6e-177 AT1G22380 337 / 4e-111 UDP-glucosyl transferase 85A3 (.1) Lus10009876 [exp] 401 / 6e-136 AT1G22380 295 / 2e-94 UDP-glucosyl transferase 85A3 (.1) Lus10014831 [exp] 390 / 9e-132 AT1G22380 296 / 5e-95 UDP-glucosyl transferase 85A3 (.1) Lus10004670 [exp] 385 / 9e-130 AT1G22340 313 / 1e-101 UDP-glucosyl transferase 85A7 (.1) Lus10013922 [exp] 335 / 5e-110 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 330 / 3e-108 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 325 / 3e-106 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 322 / 4e-105 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 322 / 5e-105 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 320 / 2e-104 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G105300.1 pacid=42810679 polypeptide=Potri.016G105300.1.p locus=Potri.016G105300 ID=Potri.016G105300.1.v4.1 annot-version=v4.1 ATGGAGCAGCCTGTTGTCCCTCACGTAGTCTTCCTACCCTTCCCTGCACAAGGTCATGTCAAACCAATGCTCATGCTAGCAGAGCTTCTTAGCCAGGCTG GTTTTGAAGCCACCTTCATCAACTCCAATCACATTCAGGATCGTCTTGAACATTCCACAGACATAGCCACCATGTACTGTCGCTTCCCCAAGTTTCAATT CAGGTCCATCCCTGATGGTCTCCCATCCGATCATCCTCGCTCCGGCTCAAGCATCTCTCAACTTTTAATCGCTTCTAGAGATGAGACCAGGACAGAATTT CGCAACTTGTTGGTTAATCTTGGGCAAAAAAATGGCCGGTGGGAGCCTCCAACGTGTATTATCGCTGATGGGATCATGTCTTTTGCTATCGATATTGCCG AGGAGCTCACAATTCCAGTCATAACTTTTAGAACATTCAGTGCTTGTTGCACTTGGACTTACTTCCATCTCACAAAACTCATTGAAGAAGGCGAAGTTCC ATTCCAAGGAGATGTAGACATGGACAAGACCATTACATGTATTCCTGGATTGGAAGGCACTCTCCGGTATCGAGACCTCCCAAGCATTTGCAGACGCAAA GAAGCTAATGATCCGCTTTTTCAGTTCTTCATCAAGGAAACTGCAGCTATGCCACGAGCATCTGGTCTCATACTTAACACCTTTGATAGACTCGAAGCCT CTATGGTCTCTAAACTTGGCTCCTTCTTTTCCAAGATTTACACTCTTGGTCCTCTACAAGGTCTCTTCGATACCTTTGCTGAAAGCCCCTCCGCAAGAAC TTCCTCCAATGGTCTCTTGTGGAAAGAAGACAGAGGCTGCATGACGTGGCTTGATTCTCATCCGTCAAGATCGGTAATATATGTTAGTTTTGGTAGCTTG GTTGGTCTATTTCGTGATCAACTATTGGAGTTTTGGCATGGTTTAGTGAATAGTGGGAAACCATTCCTCTGGGTCATAAGATCTGACTCAATCATGGAAG AAGATGGTGTTAGTGAGGTTCCTTTGCAACTTAAAGCTGCAACTGAGGAAAGGGGATGCATAGTGGACTGGGCTCCACAAGAAGAGGTCCTAGCCCATCC AGCCATTGGAGGGTTCTTGACTCACAGTGGATGGAACTCCACATTGGAGAGTATTTTTGCAGGAGTTCCAATGGTTTGTTGGCCCATGATTGCTGACCAA CAAGTGAATAGTAGGTGTGTTAGCGAGTTATGGAAGATTGGTTTTGATATGAAAGACAAGTGTGAGAGGGCCGTGATTGAGAAATTGGTAAGGGATTTGA TGGAAAGTGACGAGATTGTCAAATCGACAGATGAATTTGCAGGGATGGCTCGTGATAGCGTGAAGGAAGGTGGATCTTCCTACTCCAACTTGCAGAAGCT AATTGATGATATAAAATCGATGAGTTTAGCCGGGAAGGTCTCTTCATCAAGTGTTGGATAA
AA sequence Show only first row Show all	>Potri.016G105300.1 pacid=42810679 polypeptide=Potri.016G105300.1.p locus=Potri.016G105300 ID=Potri.016G105300.1.v4.1 annot-version=v4.1 MEQPVVPHVVFLPFPAQGHVKPMLMLAELLSQAGFEATFINSNHIQDRLEHSTDIATMYCRFPKFQFRSIPDGLPSDHPRSGSSISQLLIASRDETRTEF RNLLVNLGQKNGRWEPPTCIIADGIMSFAIDIAEELTIPVITFRTFSACCTWTYFHLTKLIEEGEVPFQGDVDMDKTITCIPGLEGTLRYRDLPSICRRK EANDPLFQFFIKETAAMPRASGLILNTFDRLEASMVSKLGSFFSKIYTLGPLQGLFDTFAESPSARTSSNGLLWKEDRGCMTWLDSHPSRSVIYVSFGSL VGLFRDQLLEFWHGLVNSGKPFLWVIRSDSIMEEDGVSEVPLQLKAATEERGCIVDWAPQEEVLAHPAIGGFLTHSGWNSTLESIFAGVPMVCWPMIADQ QVNSRCVSELWKIGFDMKDKCERAVIEKLVRDLMESDEIVKSTDEFAGMARDSVKEGGSSYSNLQKLIDDIKSMSLAGKVSSSSVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	0	1
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.010G011300 [exp]	1.73	0.8947
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105400 [exp]	1.73	0.9456
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052166 [exp]	6.16	0.9000
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128700 [exp]	10.58	0.8706
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	10.95	0.8704
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015200 [exp]	16.00	0.8400
AT1G02740			MRG family protein (.1)		Potri.014G022400 [exp]	19.44	0.8179
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G171300 [exp]	24.81	0.8499
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G083000 [exp]	26.92	0.8551
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.001G144100 [exp]	27.82	0.8500

Compare expression of checked genes

Potri.016G105300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.